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TUBA1A
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  • TISSUE

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  • TUBA1A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:584.2 nTPM
FANTOM5:936.3 Scaled Tags Per Million
Pig:498.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB008686
Glial cells MediumNot detectedNot detectedNot detected
Neuronal cells HighHighLowMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

584.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 584.2
Samples: 300

Max nTPM: 1348.2
Min nTPM: 243.7
Std nTPM: 180.7
Median nTPM: 558.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1348.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 1327.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1237.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1233.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1153.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1140.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1079.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1059.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1042.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 956.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 954.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 944.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 937.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 935.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 908.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 905.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 898.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 856.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 853.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 852.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 852.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 851.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 850.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 848.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 838.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 833.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 832.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 832.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 825.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 823.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 820.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 814.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 808.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 806.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 802.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 787.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 781.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 779.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 774.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 774.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 772.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 771.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 763.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 762.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 759.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 753.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 751.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 750.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 745.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 744.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 738.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 733.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 728.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 724.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 722.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 721.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 718.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 718.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 715.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 712.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 711.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 699.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 699.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 696.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 695.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 695.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 693.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 691.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 689.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 688.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 687.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 680.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 675.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 674.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 672.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 671.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 669.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 668.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 668.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 666.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 666.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 666.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 664.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 664.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 659.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 649.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 643.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 643.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 642.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 640.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 639.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 638.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 637.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 634.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 634.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 628.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 626.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 626.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 625.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 623.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 623.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 622.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 610.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 610.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 610.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 609.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 607.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 607.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 606.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 603.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 603.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 601.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 601.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 598.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 597.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 597.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 596.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 595.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 590.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 589.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 588.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 588.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 587.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 585.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 584.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 583.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 582.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 581.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 580.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 578.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 577.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 577.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 576.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 574.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 574.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 568.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 568.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 568.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 567.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 566.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 566.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 564.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 563.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 562.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 561.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 561.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 560.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 559.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 558.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 558.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 557.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 557.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 552.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 549.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 549.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 549.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 548.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 547.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 545.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 541.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 541.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 537.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 536.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 534.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 533.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 533.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 532.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 531.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 529.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 528.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 528.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 528.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 524.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 524.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 523.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 522.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 522.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 520.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 519.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 517.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 517.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 517.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 516.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 516.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 515.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 515.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 515.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 514.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 513.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 512.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 512.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 510.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 510.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 506.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 506.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 506.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 502.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 501.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 499.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 498.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 497.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 497.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 493.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 490.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 488.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 486.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 483.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 481.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 481.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 480.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 480.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 480.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 479.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 478.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 477.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 476.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 476.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 476.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 474.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 474.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 469.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 466.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 466.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 466.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 462.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 462.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 457.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 456.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 453.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 451.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 451.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 450.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 449.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 446.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 446.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 446.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 444.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 444.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 443.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 441.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 439.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 439.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 439.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 436.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 435.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 434.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 433.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 429.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 429.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 429.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 427.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 425.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 424.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 423.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 420.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 417.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 416.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 415.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 412.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 411.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 410.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 405.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 405.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 405.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 402.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 401.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 400.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 398.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 397.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 397.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 392.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 392.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 390.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 389.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 384.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 371.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 369.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 367.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 363.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 363.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 359.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 358.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 358.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 357.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 343.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 338.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 328.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 328.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 327.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 318.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 318.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 309.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 309.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 302.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 289.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 288.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 287.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 281.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 275.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 243.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

936.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 936.3
FF:10164-103B2 76 years, female 936.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

498.4
Pig sample Sample description nTPM
Caudate
nTPM: 498.4
Samples: 4

Max nTPM: 659.0
Min nTPM: 359.1
Sample A Female 412.2
Sample B Female 563.2
Sample C Male 659.0
Sample D Male 359.1

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