We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TTYH1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TTYH1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:401.3 nTPM
FANTOM5:250.4 Scaled Tags Per Million
Pig:122.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA023617Antibody HPA050655
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

401.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 401.3
Samples: 300

Max nTPM: 1126.7
Min nTPM: 55.1
Std nTPM: 186.2
Median nTPM: 375.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1126.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1101.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1054.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1052.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 993.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 906.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 877.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 842.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 836.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 813.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 810.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 805.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 795.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 793.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 786.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 766.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 744.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 741.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 738.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 734.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 729.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 696.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 693.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 685.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 677.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 671.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 667.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 661.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 640.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 623.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 620.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 608.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 606.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 605.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 605.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 603.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 600.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 596.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 595.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 594.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 590.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 587.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 586.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 578.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 575.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 574.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 566.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 552.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 551.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 548.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 548.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 547.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 538.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 537.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 536.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 536.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 533.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 527.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 527.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 525.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 522.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 521.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 520.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 520.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 520.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 518.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 517.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 515.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 515.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 507.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 504.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 503.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 501.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 501.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 494.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 490.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 490.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 489.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 488.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 488.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 483.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 482.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 481.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 479.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 478.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 476.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 472.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 470.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 469.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 469.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 467.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 466.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 466.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 465.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 464.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 461.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 461.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 459.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 455.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 454.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 453.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 450.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 445.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 445.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 444.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 441.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 441.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 440.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 437.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 436.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 434.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 433.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 430.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 425.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 424.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 423.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 422.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 421.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 420.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 419.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 419.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 417.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 416.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 413.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 413.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 405.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 404.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 404.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 403.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 402.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 400.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 395.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 394.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 393.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 392.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 391.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 390.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 390.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 389.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 387.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 387.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 384.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 384.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 383.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 381.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 381.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 379.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 378.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 378.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 377.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 373.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 372.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 369.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 369.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 368.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 368.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 368.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 365.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 362.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 360.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 356.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 355.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 353.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 350.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 350.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 350.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 349.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 349.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 348.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 347.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 347.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 345.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 342.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 339.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 337.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 337.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 336.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 335.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 335.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 335.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 332.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 329.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 323.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 322.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 321.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 320.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 320.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 320.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 319.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 318.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 317.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 316.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 315.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 315.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 315.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 314.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 313.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 313.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 312.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 312.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 309.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 307.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 305.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 304.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 304.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 301.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 300.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 300.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 299.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 297.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 294.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 292.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 289.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 284.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 283.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 281.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 279.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 279.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 278.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 277.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 277.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 275.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 274.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 274.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 271.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 271.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 270.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 263.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 263.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 263.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 262.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 261.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 259.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 257.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 257.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 253.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 253.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 253.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 248.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 247.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 245.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 245.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 242.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 240.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 240.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 239.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 239.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 238.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 237.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 237.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 236.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 233.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 228.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 227.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 225.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 225.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 223.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 219.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 216.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 214.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 212.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 209.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 204.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 201.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 201.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 199.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 198.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 197.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 196.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 195.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 188.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 186.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 186.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 185.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 184.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 182.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 179.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 177.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 175.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 165.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 164.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 163.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 159.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 157.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 154.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 151.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 149.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 146.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 141.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 137.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 130.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 125.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 125.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 124.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 122.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 113.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 93.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 86.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 75.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 55.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

250.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 250.4
FF:10164-103B2 76 years, female 250.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.4
Pig sample Sample description nTPM
Caudate
nTPM: 122.5
Samples: 4

Max nTPM: 145.9
Min nTPM: 83.0
Sample A Female 83.0
Sample B Female 138.7
Sample C Male 145.9
Sample D Male 122.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo