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  • EEF2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:549.3 nTPM
FANTOM5:663.1 Scaled Tags Per Million
Pig:451.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA040534Antibody HPA057351Antibody CAB007795
Glial cells MediumNot detectedLow
Neuronal cells MediumMediumLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

549.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 549.3
Samples: 300

Max nTPM: 1179.5
Min nTPM: 252.4
Std nTPM: 130.8
Median nTPM: 537.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1179.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1050.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1017.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 970.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 934.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 920.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 883.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 873.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 866.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 860.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 827.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 799.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 781.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 775.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 771.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 765.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 760.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 749.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 747.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 741.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 738.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 731.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 730.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 719.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 718.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 715.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 714.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 714.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 713.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 709.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 708.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 703.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 699.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 695.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 695.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 694.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 693.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 693.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 689.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 682.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 681.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 680.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 679.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 679.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 673.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 671.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 670.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 668.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 667.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 663.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 661.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 658.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 657.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 647.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 645.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 641.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 640.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 639.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 638.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 637.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 636.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 636.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 635.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 634.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 631.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 629.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 628.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 623.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 622.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 622.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 620.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 619.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 617.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 615.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 615.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 614.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 612.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 609.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 609.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 608.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 608.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 608.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 604.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 603.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 602.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 599.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 598.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 597.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 597.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 594.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 591.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 591.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 591.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 589.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 588.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 587.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 587.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 586.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 585.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 584.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 582.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 582.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 581.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 579.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 579.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 578.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 577.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 577.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 575.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 574.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 574.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 573.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 573.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 572.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 572.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 572.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 571.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 570.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 569.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 568.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 568.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 567.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 564.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 564.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 563.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 562.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 561.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 559.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 559.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 558.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 557.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 557.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 556.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 553.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 551.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 549.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 548.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 548.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 547.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 544.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 544.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 544.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 544.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 543.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 541.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 540.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 540.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 539.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 538.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 537.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 536.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 535.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 535.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 534.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 533.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 532.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 531.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 530.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 529.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 527.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 526.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 525.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 524.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 523.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 523.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 522.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 518.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 518.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 513.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 511.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 511.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 511.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 511.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 510.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 509.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 508.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 507.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 505.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 504.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 504.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 503.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 503.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 503.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 501.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 499.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 499.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 498.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 498.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 498.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 496.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 496.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 496.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 496.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 495.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 493.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 493.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 492.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 491.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 490.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 488.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 487.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 487.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 487.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 487.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 487.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 486.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 483.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 483.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 483.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 481.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 480.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 476.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 475.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 474.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 474.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 473.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 471.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 469.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 468.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 468.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 467.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 467.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 465.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 464.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 463.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 460.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 457.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 456.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 454.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 454.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 453.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 451.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 450.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 449.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 447.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 446.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 445.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 445.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 444.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 444.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 443.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 443.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 441.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 439.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 438.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 436.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 436.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 436.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 435.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 435.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 432.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 429.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 427.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 427.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 427.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 425.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 424.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 423.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 420.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 420.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 414.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 414.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 414.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 410.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 409.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 409.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 408.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 407.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 399.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 399.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 398.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 398.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 397.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 396.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 396.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 394.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 392.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 391.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 390.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 389.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 383.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 383.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 380.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 378.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 374.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 374.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 370.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 366.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 366.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 365.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 352.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 344.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 339.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 335.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 305.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 303.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 303.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 285.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 272.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 252.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

663.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 663.1
FF:10164-103B2 76 years, female 663.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

451.3
Pig sample Sample description nTPM
Caudate
nTPM: 451.3
Samples: 4

Max nTPM: 532.2
Min nTPM: 391.5
Sample A Female 391.5
Sample B Female 473.6
Sample C Male 532.2
Sample D Male 408.0

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