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AHCYL1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • AHCYL1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:196.3 nTPM
FANTOM5:525.3 Scaled Tags Per Million
Pig:207.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA042589
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 196.3
Samples: 300

Max nTPM: 585.6
Min nTPM: 43.3
Std nTPM: 78.0
Median nTPM: 183.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 585.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 496.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 482.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 403.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 401.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 394.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 390.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 375.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 374.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 369.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 367.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 366.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 365.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 352.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 350.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 343.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 337.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 333.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 333.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 331.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 331.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 330.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 330.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 317.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 315.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 311.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 308.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 307.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 302.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 301.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 300.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 298.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 297.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 297.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 295.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 295.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 294.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 293.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 291.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 287.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 284.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 280.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 273.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 271.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 269.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 266.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 265.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 260.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 258.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 257.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 257.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 257.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 256.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 255.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 252.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 251.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 250.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 248.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 247.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 246.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 244.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 243.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 242.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 242.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 240.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 240.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 238.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 238.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 236.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 235.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 234.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 234.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 234.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 234.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 233.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 231.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 229.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 228.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 228.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 227.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 226.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 225.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 223.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 223.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 223.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 222.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 222.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 222.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 221.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 221.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 221.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 220.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 219.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 219.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 219.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 217.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 217.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 216.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 215.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 215.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 215.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 215.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 213.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 213.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 212.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 212.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 211.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 211.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 210.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 209.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 209.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 209.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 208.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 205.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 205.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 205.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 202.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 202.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 201.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 201.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 200.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 199.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 198.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 198.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 197.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 197.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 196.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 196.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 195.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 194.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 194.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 193.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 192.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 192.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 191.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 190.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 190.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 190.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 189.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 189.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 189.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 189.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 188.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 188.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 186.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 186.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 185.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 185.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 184.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 184.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 182.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 180.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 180.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 180.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 179.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 179.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 179.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 178.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 178.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 178.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 178.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 177.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 177.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 176.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 176.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 174.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 173.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 173.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 172.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 172.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 172.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 171.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 171.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 170.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 170.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 170.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 170.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 169.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 169.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 169.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 167.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 166.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 166.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 166.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 165.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 163.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 163.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 163.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 163.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 163.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 162.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 161.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 160.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 160.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 160.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 159.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 155.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 154.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 153.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 153.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 153.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 153.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 152.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 151.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 151.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 150.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 150.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 149.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 148.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 148.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 148.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 147.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 147.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 146.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 146.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 146.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 146.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 145.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 145.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 144.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 144.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 143.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 143.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 143.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 143.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 140.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 140.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 139.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 139.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 139.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 139.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 138.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 138.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 138.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 137.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 136.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 136.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 136.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 135.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 134.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 134.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 133.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 132.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 132.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 132.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 131.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 129.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 128.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 128.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 128.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 127.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 126.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 125.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 125.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 124.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 124.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 123.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 123.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 121.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 120.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 120.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 119.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 119.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 119.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 119.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 118.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 118.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 117.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 116.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 116.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 116.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 115.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 114.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 112.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 111.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 110.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 110.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 109.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 109.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 107.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 107.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 106.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 106.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 104.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 104.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 103.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 95.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 95.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 94.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 88.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 84.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 80.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 78.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 69.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 66.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 65.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 65.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 56.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 48.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 43.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

525.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 525.3
FF:10164-103B2 76 years, female 525.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.7
Pig sample Sample description nTPM
Caudate
nTPM: 207.7
Samples: 4

Max nTPM: 235.0
Min nTPM: 176.1
Sample A Female 176.1
Sample B Female 231.1
Sample C Male 235.0
Sample D Male 188.6

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