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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • MAT2A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:150.0 nTPM
FANTOM5:223.5 Scaled Tags Per Million
Pig:134.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043028Antibody CAB009968
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 150.0
Samples: 300

Max nTPM: 466.7
Min nTPM: 58.1
Std nTPM: 41.2
Median nTPM: 146.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 466.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 296.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 269.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 268.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 254.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 249.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 240.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 234.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 230.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 224.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 222.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 220.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 219.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 217.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 217.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 214.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 213.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 208.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 208.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 207.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 207.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 205.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 203.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 203.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 202.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 202.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 201.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 200.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 200.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 199.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 199.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 198.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 197.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 197.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 194.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 193.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 193.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 192.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 191.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 191.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 191.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 189.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 188.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 187.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 186.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 185.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 185.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 184.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 183.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 182.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 182.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 182.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 181.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 181.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 180.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 180.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 180.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 179.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 179.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 177.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 176.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 176.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 175.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 175.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 174.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 173.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 173.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 173.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 173.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 173.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 173.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 172.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 172.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 171.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 170.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 169.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 169.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 168.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 168.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 167.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 167.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 167.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 167.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 166.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 166.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 166.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 166.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 166.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 166.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 165.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 165.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 165.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 164.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 163.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 162.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 162.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 162.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 162.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 161.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 161.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 160.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 160.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 159.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 159.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 159.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 159.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 158.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 158.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 157.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 157.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 156.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 156.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 155.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 155.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 155.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 155.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 154.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 154.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 154.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 154.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 154.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 153.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 152.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 152.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 152.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 152.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 152.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 151.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 151.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 151.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 151.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 150.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 150.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 150.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 150.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 150.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 149.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 149.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 149.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 149.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 149.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 148.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 148.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 148.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 148.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 147.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 147.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 147.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 147.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 146.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 146.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 146.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 146.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 146.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 145.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 144.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 144.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 144.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 144.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 143.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 143.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 143.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 143.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 143.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 143.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 142.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 142.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 142.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 141.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 141.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 141.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 141.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 141.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 140.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 140.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 140.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 139.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 139.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 139.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 138.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 137.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 137.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 137.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 136.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 136.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 136.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 136.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 135.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 135.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 135.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 134.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 134.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 134.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 134.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 134.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 134.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 134.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 133.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 133.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 133.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 132.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 132.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 132.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 132.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 132.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 131.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 131.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 131.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 130.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 130.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 130.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 129.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 128.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 128.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 128.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 128.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 128.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 127.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 127.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 126.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 125.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 125.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 125.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 125.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 124.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 124.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 123.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 123.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 123.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 122.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 121.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 121.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 120.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 120.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 120.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 119.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 118.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 118.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 118.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 118.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 118.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 116.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 116.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 116.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 116.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 115.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 115.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 114.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 114.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 113.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 112.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 112.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 112.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 111.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 110.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 110.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 110.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 110.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 109.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 109.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 108.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 108.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 107.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 106.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 106.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 106.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 106.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 106.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 105.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 105.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 105.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 103.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 103.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 102.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 102.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 100.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 99.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 99.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 96.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 96.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 96.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 95.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 92.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 92.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 92.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 91.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 91.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 91.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 91.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 88.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 87.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 84.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 84.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 80.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 80.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 76.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 71.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 68.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 58.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

223.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 223.5
FF:10164-103B2 76 years, female 223.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.0
Pig sample Sample description nTPM
Caudate
nTPM: 134.0
Samples: 4

Max nTPM: 136.3
Min nTPM: 131.1
Sample A Female 136.3
Sample B Female 131.1
Sample C Male 135.8
Sample D Male 132.8

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