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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • ATP5ME
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:773.0 nTPM
FANTOM5:168.2 Scaled Tags Per Million
Pig:42.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035010
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

773.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 773.0
Samples: 300

Max nTPM: 2340.8
Min nTPM: 356.2
Std nTPM: 237.1
Median nTPM: 732.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2340.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1747.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1717.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1677.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1666.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1637.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1506.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1361.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1353.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1288.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1257.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1241.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1186.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1168.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1132.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1127.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1124.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1116.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1094.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1092.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1089.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1084.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1080.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1059.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1058.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1045.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1043.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1037.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1033.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1031.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1022.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1020.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1019.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1019.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1014.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1011.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1003.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 995.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 994.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 989.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 981.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 977.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 975.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 964.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 961.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 961.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 961.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 954.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 951.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 945.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 945.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 936.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 935.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 933.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 931.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 928.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 926.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 926.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 917.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 917.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 916.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 911.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 911.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 909.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 907.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 903.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 898.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 896.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 892.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 878.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 875.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 873.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 870.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 869.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 866.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 864.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 864.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 861.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 860.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 859.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 855.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 853.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 850.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 850.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 843.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 842.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 839.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 835.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 835.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 830.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 830.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 829.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 824.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 823.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 816.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 815.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 814.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 814.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 811.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 811.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 806.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 805.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 803.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 802.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 802.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 798.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 797.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 796.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 795.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 794.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 794.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 794.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 791.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 788.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 786.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 786.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 783.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 781.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 778.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 777.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 776.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 773.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 770.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 762.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 762.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 762.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 762.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 759.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 759.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 758.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 757.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 757.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 757.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 753.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 753.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 752.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 749.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 748.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 746.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 746.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 745.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 744.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 744.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 742.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 741.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 739.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 739.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 737.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 737.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 734.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 731.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 730.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 724.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 722.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 722.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 722.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 721.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 720.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 720.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 717.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 716.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 716.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 715.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 715.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 714.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 713.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 701.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 700.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 700.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 698.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 697.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 694.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 692.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 692.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 692.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 690.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 690.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 689.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 688.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 685.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 684.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 683.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 682.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 681.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 680.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 680.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 678.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 674.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 670.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 669.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 669.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 668.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 668.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 666.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 663.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 659.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 658.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 658.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 657.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 656.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 654.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 654.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 651.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 650.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 650.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 650.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 645.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 644.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 644.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 643.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 643.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 638.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 638.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 638.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 637.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 637.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 636.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 634.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 634.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 632.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 631.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 628.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 628.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 626.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 625.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 622.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 620.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 619.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 619.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 618.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 617.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 617.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 615.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 615.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 614.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 613.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 613.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 612.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 610.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 609.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 604.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 602.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 602.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 597.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 596.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 596.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 595.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 590.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 589.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 587.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 582.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 581.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 581.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 581.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 580.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 579.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 579.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 571.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 569.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 567.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 565.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 563.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 561.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 556.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 556.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 555.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 553.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 552.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 550.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 549.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 548.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 548.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 547.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 545.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 536.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 534.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 531.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 526.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 524.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 521.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 519.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 516.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 514.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 509.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 507.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 498.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 496.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 477.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 467.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 457.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 452.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 450.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 449.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 439.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 435.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 432.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 410.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 400.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 368.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 356.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 168.2
FF:10164-103B2 76 years, female 168.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.3
Pig sample Sample description nTPM
Caudate
nTPM: 42.4
Samples: 4

Max nTPM: 48.1
Min nTPM: 38.7
Sample A Female 38.7
Sample B Female 43.1
Sample C Male 48.1
Sample D Male 39.5

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