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UQCRFS1
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • UQCRFS1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:33.8 nTPM
FANTOM5:86.2 Scaled Tags Per Million
Pig:60.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041863Antibody HPA050339
Glial cells HighMedium
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.8
Samples: 300

Max nTPM: 68.2
Min nTPM: 17.1
Std nTPM: 8.7
Median nTPM: 32.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 67.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 66.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 63.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 63.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 63.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 58.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 53.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 53.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 53.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 52.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 52.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 52.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 52.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 51.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 51.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 51.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 50.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 50.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 50.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 48.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 48.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 48.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 48.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 47.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 46.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 45.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 45.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 44.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 44.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 43.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 43.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 43.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 43.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 43.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 43.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 43.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 43.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 42.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 42.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 42.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 42.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 42.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 41.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 41.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 41.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 41.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 40.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 40.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 40.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 40.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 40.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 40.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 39.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 39.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 39.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 39.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 39.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 38.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 38.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 38.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 38.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 38.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 38.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 38.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 38.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 37.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 37.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 37.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 37.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 37.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 37.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 37.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 36.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 36.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 36.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 36.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 36.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 36.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 36.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 36.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 36.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 36.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 36.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 36.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 36.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 36.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 36.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 35.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 35.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 35.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 35.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 35.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 35.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 35.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 35.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 35.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 35.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 35.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 35.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 35.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 35.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 35.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 35.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 34.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 34.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 34.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 34.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 34.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 34.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 34.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 34.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 34.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 34.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 34.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 34.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 34.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 34.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 34.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 34.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 34.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 34.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 33.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 33.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 33.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 33.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 33.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 33.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 33.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 33.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 33.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 33.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 33.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 33.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 33.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 32.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 32.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 32.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 32.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 32.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 32.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 32.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 32.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 32.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 32.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 32.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 32.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 32.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 32.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 32.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 32.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 32.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 32.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 32.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 32.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 32.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 32.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 32.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 32.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 31.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 31.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 31.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 31.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 31.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 31.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 31.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 30.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 30.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 30.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 30.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 30.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 30.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 30.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 30.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 30.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 30.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 30.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 30.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 30.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 30.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 30.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 30.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 30.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 30.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 30.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 29.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 29.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 29.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 29.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 29.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 29.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 29.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 29.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 29.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 29.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 29.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 29.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 29.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 29.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 29.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 29.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 29.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 29.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 29.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 29.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 28.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 28.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 28.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 28.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 28.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 28.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 28.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 28.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 28.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 28.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 28.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 28.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 28.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 28.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 28.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 28.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 28.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 28.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 28.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 28.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 28.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 28.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 28.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 28.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 27.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 27.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 27.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 27.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 27.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 27.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 27.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 27.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 27.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 27.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 27.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 27.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 27.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 27.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 27.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 26.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 26.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 26.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 26.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 26.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 26.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 26.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 26.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 26.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 26.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 26.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 26.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 26.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 26.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 25.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 25.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 25.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 25.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 25.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 25.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 25.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 25.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 25.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 24.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 24.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 24.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 24.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 24.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 24.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 23.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 23.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 23.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 23.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 23.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 22.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 22.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 22.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 22.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 22.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 22.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 21.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 21.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 21.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 21.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 21.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 20.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 20.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 20.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 20.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 19.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 18.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 17.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 17.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.2
FF:10164-103B2 76 years, female 86.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.8
Pig sample Sample description nTPM
Caudate
nTPM: 60.8
Samples: 4

Max nTPM: 66.0
Min nTPM: 57.1
Sample A Female 59.1
Sample B Female 57.1
Sample C Male 66.0
Sample D Male 60.9

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