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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:48.5 nTPM
FANTOM5:123.9 Scaled Tags Per Million
Pig:60.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008019Antibody HPA060804
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.5
Samples: 300

Max nTPM: 274.6
Min nTPM: 13.0
Std nTPM: 30.6
Median nTPM: 42.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 274.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 217.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 217.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 204.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 202.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 150.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 140.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 120.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 113.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 104.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 100.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 97.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 93.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 92.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 91.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 89.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 86.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 82.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 81.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 80.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 79.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 77.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 75.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 74.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 73.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 72.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 71.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 71.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 70.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 69.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 68.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 68.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 66.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 65.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 65.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 65.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 65.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 65.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 65.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 64.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 64.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 64.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 63.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 63.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 63.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 63.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 62.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 62.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 62.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 61.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 61.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 61.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 61.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 61.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 59.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 59.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 59.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 58.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 58.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 57.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 57.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 57.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 57.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 57.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 56.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 56.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 56.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 56.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 56.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 56.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 56.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 56.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 55.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 55.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 55.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 55.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 55.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 54.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 54.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 54.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 54.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 54.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 54.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 54.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 53.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 53.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 52.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 52.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 52.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 52.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 52.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 51.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 50.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 50.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 50.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 50.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 50.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 49.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 49.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 49.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 48.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 48.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 47.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 47.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 47.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 47.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 47.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 47.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 47.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 47.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 47.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 46.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 46.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 46.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 46.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 46.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 46.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 46.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 46.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 46.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 45.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 45.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 45.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 45.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 45.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 45.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 45.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 45.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 44.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 44.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 44.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 44.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 44.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 43.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 43.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 43.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 43.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 43.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 43.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 43.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 43.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 42.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 42.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 42.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 42.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 42.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 42.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 41.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 41.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 41.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 41.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 41.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 41.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 41.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 41.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 40.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 40.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 40.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 40.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 40.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 40.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 40.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 40.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 39.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 39.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 39.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 39.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 39.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 39.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 39.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 39.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 38.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 38.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 38.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 38.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 38.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 38.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 38.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 38.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 37.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 37.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 37.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 37.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 37.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 36.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 36.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 36.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 36.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 35.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 35.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 35.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 35.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 34.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 34.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 34.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 34.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 34.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 33.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 33.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 33.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 33.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 33.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 33.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 33.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 33.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 33.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 33.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 33.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 32.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 32.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 32.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 32.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 32.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 32.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 32.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 32.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 31.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 31.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 31.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 31.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 31.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 31.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 30.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 30.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 30.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 30.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 30.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 29.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 29.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 29.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 28.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 28.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 28.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 28.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 28.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 28.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 28.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 28.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 27.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 27.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 26.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 26.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 26.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 26.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 26.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 26.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 25.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 25.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 25.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 25.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 25.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 24.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 24.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 24.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 24.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 24.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 24.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 24.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 23.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 23.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 23.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 23.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 23.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 23.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 22.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 22.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 21.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 21.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 20.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 20.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 20.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 20.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 19.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 19.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 19.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 19.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 18.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 18.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 18.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 17.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 17.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 17.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 16.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 15.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 14.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 13.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 13.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

123.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 123.9
FF:10164-103B2 76 years, female 123.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.5
Pig sample Sample description nTPM
Caudate
nTPM: 60.5
Samples: 4

Max nTPM: 76.3
Min nTPM: 48.4
Sample A Female 76.3
Sample B Female 48.4
Sample C Male 60.8
Sample D Male 56.6

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