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LSM3
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • LSM3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:11.4 nTPM
FANTOM5:25.0 Scaled Tags Per Million
Pig:5.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044966
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.4
Samples: 300

Max nTPM: 25.9
Min nTPM: 7.3
Std nTPM: 2.6
Median nTPM: 11.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 25.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 23.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 22.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 21.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 20.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 18.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 18.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 18.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 18.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 17.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 17.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 16.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 16.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 16.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 16.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 15.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 15.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 15.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 15.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 15.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 15.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 15.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 15.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 15.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 15.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 15.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 14.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 14.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 14.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 14.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 14.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 14.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 14.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 14.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 13.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 13.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 13.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 13.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 13.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 13.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 13.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 13.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 13.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 13.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 13.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 13.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 13.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 13.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 13.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 13.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 13.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 12.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 12.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 12.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 12.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 12.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 12.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 12.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 12.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 12.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 12.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 12.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 12.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 12.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 12.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 12.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 12.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 12.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 12.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 12.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 12.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 12.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 12.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 12.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 12.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 12.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 12.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 12.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 12.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 12.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 12.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 12.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 12.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 12.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 12.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 12.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 12.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 12.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 12.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 12.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 12.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 12.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 12.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 11.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 11.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 11.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 11.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 11.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 11.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 11.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 11.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 11.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 11.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 11.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 11.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 11.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 11.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 11.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 11.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 11.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 11.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 11.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 11.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 11.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 11.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 11.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 11.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 11.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 11.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 11.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 11.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 11.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 11.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 11.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 11.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 11.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 11.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 11.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 11.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 11.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 11.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 11.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 11.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 11.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 11.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 11.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 11.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 11.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 11.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 11.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 11.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 11.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 11.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 11.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 11.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 11.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 11.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 10.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 10.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 10.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 10.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 10.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 10.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 10.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 10.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 10.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 10.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 10.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 10.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 10.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 10.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 10.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 10.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 10.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 10.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 10.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 10.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 10.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 10.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 10.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 10.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 10.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 10.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 10.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 10.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 10.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 10.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 10.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 10.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 10.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 10.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 10.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 10.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 10.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 10.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 10.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 10.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 10.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 10.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 10.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 10.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 10.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 10.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 10.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 10.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 10.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 10.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 10.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 10.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 10.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 10.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 10.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 10.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 10.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 10.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 10.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 10.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 10.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 10.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 9.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 9.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 9.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 9.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 9.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 9.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 9.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 9.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 9.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 9.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 9.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 9.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 9.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 9.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 9.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 9.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 9.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 9.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 9.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 9.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 9.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 9.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 9.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 9.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 9.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 9.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 9.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 9.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 9.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 9.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 9.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 9.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 9.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 9.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 9.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 9.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 9.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 9.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 9.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 9.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 9.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 9.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 9.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 9.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 9.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 9.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 9.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 9.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 9.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 9.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 9.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 9.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 9.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 8.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 8.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 8.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 8.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 8.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 8.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 8.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 8.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 8.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 8.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 8.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 8.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 8.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 8.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 8.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 8.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 8.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 8.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 8.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 8.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 8.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 8.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 7.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 7.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 7.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 7.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 7.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 7.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 7.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 7.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.0
FF:10164-103B2 76 years, female 25.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.3
Sample A Female 6.3
Sample B Female 5.3
Sample C Male 5.5
Sample D Male 5.4

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