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RCAN2
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  • RCAN2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:52.3 nTPM
FANTOM5:144.2 Scaled Tags Per Million
Pig:125.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA053880
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.3
Samples: 300

Max nTPM: 235.3
Min nTPM: 5.3
Std nTPM: 31.3
Median nTPM: 48.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 235.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 148.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 128.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 125.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 123.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 119.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 118.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 118.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 116.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 115.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 114.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 113.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 110.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 109.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 109.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 108.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 107.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 105.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 102.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 102.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 101.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 100.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 100.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 99.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 98.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 97.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 97.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 97.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 96.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 96.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 95.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 94.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 92.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 92.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 92.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 91.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 90.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 90.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 90.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 89.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 89.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 88.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 88.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 88.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 86.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 85.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 84.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 82.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 82.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 82.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 82.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 81.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 81.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 80.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 80.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 79.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 79.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 77.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 76.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 76.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 75.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 75.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 75.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 74.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 74.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 74.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 74.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 72.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 72.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 71.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 70.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 70.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 70.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 70.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 70.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 70.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 69.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 69.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 69.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 69.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 68.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 68.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 68.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 67.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 67.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 67.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 67.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 67.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 65.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 65.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 64.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 64.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 63.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 63.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 63.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 63.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 62.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 62.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 62.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 62.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 62.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 62.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 62.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 62.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 61.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 60.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 60.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 59.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 58.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 58.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 58.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 58.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 57.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 57.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 57.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 56.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 56.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 56.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 56.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 56.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 56.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 55.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 55.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 55.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 55.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 55.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 54.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 54.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 54.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 54.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 54.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 53.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 53.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 51.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 51.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 51.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 50.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 50.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 50.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 50.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 50.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 50.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 50.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 49.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 49.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 49.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 48.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 48.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 48.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 47.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 47.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 47.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 47.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 46.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 46.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 46.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 46.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 46.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 46.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 46.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 45.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 45.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 45.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 45.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 44.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 44.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 43.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 43.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 42.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 42.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 42.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 42.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 41.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 41.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 41.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 41.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 40.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 40.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 40.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 40.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 40.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 39.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 39.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 39.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 38.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 38.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 38.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 38.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 37.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 37.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 37.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 36.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 35.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 35.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 35.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 35.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 35.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 34.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 33.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 33.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 33.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 32.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 32.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 32.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 32.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 32.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 31.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 30.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 30.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 30.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 29.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 29.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 29.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 28.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 28.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 28.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 28.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 28.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 27.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 27.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 27.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 26.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 26.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 26.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 26.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 26.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 25.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 25.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 25.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 25.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 25.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 24.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 24.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 23.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 23.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 23.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 22.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 22.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 22.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 22.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 21.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 21.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 21.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 21.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 21.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 21.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 21.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 20.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 20.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 20.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 19.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 19.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 19.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 19.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 19.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 19.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 19.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 18.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 18.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 18.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 17.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 17.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 17.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 17.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 17.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 17.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 16.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 16.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 16.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 15.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 15.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 15.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 15.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 15.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 15.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 15.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 14.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 14.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 13.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 13.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 13.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 13.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 13.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 13.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 13.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 12.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 12.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 12.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 12.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 10.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 10.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 8.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 8.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 8.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 8.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 6.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 5.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

144.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 144.2
FF:10164-103B2 76 years, female 144.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.8
Pig sample Sample description nTPM
Caudate
nTPM: 125.8
Samples: 4

Max nTPM: 157.3
Min nTPM: 96.8
Sample A Female 103.0
Sample B Female 96.8
Sample C Male 157.3
Sample D Male 146.1

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