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  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • GNB2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:183.6 nTPM
FANTOM5:99.5 Scaled Tags Per Million
Pig:113.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA040736Antibody CAB010032
Glial cells Not detectedNot detected
Neuronal cells LowLow


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 183.6
Samples: 300

Max nTPM: 341.6
Min nTPM: 74.4
Std nTPM: 39.3
Median nTPM: 179.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 341.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 333.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 330.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 298.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 289.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 277.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 272.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 272.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 269.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 265.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 264.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 255.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 248.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 248.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 245.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 244.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 243.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 243.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 242.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 241.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 240.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 240.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 239.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 237.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 237.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 236.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 235.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 234.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 234.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 234.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 234.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 234.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 233.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 233.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 233.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 231.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 229.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 229.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 227.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 227.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 225.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 224.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 223.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 223.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 223.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 222.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 222.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 221.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 221.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 221.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 219.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 219.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 218.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 217.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 216.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 215.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 214.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 214.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 213.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 213.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 213.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 213.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 212.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 212.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 212.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 211.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 210.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 209.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 208.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 208.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 207.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 206.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 205.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 205.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 204.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 204.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 203.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 203.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 203.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 203.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 202.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 202.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 201.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 201.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 201.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 201.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 201.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 200.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 198.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 198.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 198.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 197.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 197.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 197.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 197.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 196.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 196.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 196.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 196.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 195.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 195.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 194.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 194.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 193.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 193.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 192.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 192.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 192.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 192.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 192.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 191.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 191.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 191.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 191.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 191.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 189.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 189.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 189.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 188.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 187.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 187.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 187.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 187.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 187.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 187.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 186.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 186.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 186.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 186.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 186.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 185.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 185.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 185.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 185.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 184.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 184.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 184.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 184.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 183.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 183.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 183.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 182.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 182.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 182.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 182.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 181.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 181.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 179.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 179.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 179.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 179.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 179.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 179.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 178.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 178.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 178.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 178.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 178.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 177.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 177.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 177.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 177.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 177.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 176.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 176.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 176.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 176.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 176.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 175.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 175.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 175.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 174.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 174.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 174.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 173.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 172.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 172.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 172.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 172.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 171.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 171.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 171.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 171.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 171.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 171.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 171.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 171.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 170.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 170.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 170.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 170.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 170.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 169.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 169.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 168.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 168.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 167.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 167.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 167.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 166.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 166.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 166.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 165.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 165.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 165.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 164.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 163.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 162.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 160.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 160.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 160.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 160.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 160.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 159.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 159.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 159.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 158.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 158.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 158.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 158.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 157.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 157.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 157.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 156.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 156.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 156.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 156.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 155.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 155.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 154.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 154.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 154.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 153.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 153.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 153.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 153.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 152.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 152.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 152.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 152.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 151.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 151.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 151.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 149.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 149.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 148.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 148.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 147.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 147.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 147.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 147.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 146.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 146.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 146.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 146.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 145.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 143.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 143.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 143.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 143.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 143.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 143.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 143.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 142.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 141.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 141.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 140.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 137.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 137.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 136.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 136.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 136.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 135.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 134.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 134.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 133.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 132.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 132.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 131.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 131.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 129.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 129.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 129.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 128.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 127.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 126.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 125.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 125.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 125.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 124.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 123.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 122.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 118.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 115.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 113.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 111.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 92.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 77.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 74.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.5
FF:10164-103B2 76 years, female 99.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.4
Pig sample Sample description nTPM
Caudate
nTPM: 113.4
Samples: 4

Max nTPM: 131.6
Min nTPM: 90.1
Sample A Female 90.1
Sample B Female 125.6
Sample C Male 131.6
Sample D Male 106.2

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