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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • FKBP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:126.8 nTPM
FANTOM5:130.7 Scaled Tags Per Million
Pig:122.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049405Antibody CAB025561
Glial cells MediumNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 126.8
Samples: 300

Max nTPM: 302.1
Min nTPM: 57.8
Std nTPM: 32.4
Median nTPM: 123.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 302.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 220.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 219.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 217.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 214.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 211.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 211.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 206.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 201.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 198.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 195.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 192.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 189.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 185.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 184.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 184.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 182.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 181.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 175.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 175.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 174.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 174.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 174.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 172.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 171.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 171.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 169.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 169.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 168.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 168.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 168.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 167.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 167.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 166.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 166.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 165.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 164.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 164.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 163.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 163.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 162.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 162.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 162.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 161.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 160.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 160.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 160.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 160.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 158.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 158.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 157.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 157.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 156.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 154.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 152.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 150.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 149.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 149.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 148.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 148.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 148.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 148.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 148.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 147.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 147.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 147.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 146.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 146.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 145.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 145.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 144.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 144.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 144.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 144.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 143.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 142.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 142.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 141.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 141.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 141.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 141.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 141.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 140.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 140.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 139.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 139.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 139.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 139.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 138.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 138.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 138.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 138.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 138.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 138.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 138.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 137.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 137.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 137.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 136.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 136.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 135.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 135.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 135.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 135.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 134.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 134.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 133.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 133.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 133.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 133.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 132.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 132.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 132.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 131.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 130.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 130.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 129.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 129.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 129.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 129.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 128.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 128.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 128.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 128.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 128.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 128.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 128.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 127.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 127.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 127.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 126.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 126.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 126.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 125.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 125.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 125.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 125.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 125.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 125.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 125.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 125.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 125.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 125.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 125.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 124.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 124.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 124.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 124.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 124.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 124.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 123.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 123.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 123.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 123.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 122.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 122.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 122.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 121.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 121.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 120.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 119.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 119.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 119.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 118.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 118.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 118.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 118.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 118.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 117.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 117.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 117.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 117.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 117.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 117.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 116.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 116.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 116.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 116.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 116.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 116.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 116.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 116.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 115.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 115.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 115.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 115.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 115.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 114.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 114.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 114.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 114.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 113.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 113.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 113.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 112.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 112.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 112.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 112.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 111.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 110.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 110.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 110.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 109.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 109.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 109.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 109.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 108.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 108.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 107.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 107.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 106.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 106.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 106.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 106.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 106.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 105.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 105.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 105.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 105.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 104.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 104.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 104.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 104.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 103.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 103.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 103.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 102.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 102.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 101.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 101.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 100.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 100.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 100.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 100.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 99.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 99.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 99.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 99.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 99.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 98.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 98.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 98.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 98.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 98.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 97.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 96.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 96.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 96.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 96.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 95.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 95.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 94.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 94.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 94.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 94.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 93.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 93.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 93.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 93.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 93.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 92.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 92.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 92.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 92.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 92.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 91.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 91.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 90.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 90.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 90.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 90.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 90.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 88.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 88.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 86.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 86.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 86.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 86.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 86.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 85.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 80.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 79.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 78.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 77.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 76.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 75.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 74.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 69.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 68.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 62.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 61.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 59.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 58.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 57.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 130.7
FF:10164-103B2 76 years, female 130.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.7
Pig sample Sample description nTPM
Caudate
nTPM: 122.7
Samples: 4

Max nTPM: 163.1
Min nTPM: 102.6
Sample A Female 102.6
Sample B Female 115.2
Sample C Male 163.1
Sample D Male 109.8

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