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RAB1B
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • RAB1B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:99.0 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:237.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA056141Antibody CAB010225
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 99.0
Samples: 300

Max nTPM: 151.6
Min nTPM: 52.5
Std nTPM: 15.0
Median nTPM: 97.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 151.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 145.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 143.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 141.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 136.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 136.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 135.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 134.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 132.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 132.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 128.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 128.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 127.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 127.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 124.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 124.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 124.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 124.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 123.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 123.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 123.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 123.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 120.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 120.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 120.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 119.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 119.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 118.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 118.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 118.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 117.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 117.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 117.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 116.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 116.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 116.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 116.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 115.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 115.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 114.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 114.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 114.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 113.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 113.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 113.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 113.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 112.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 112.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 111.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 111.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 111.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 110.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 110.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 110.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 110.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 110.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 110.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 110.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 110.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 109.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 109.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 109.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 109.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 109.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 109.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 109.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 109.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 109.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 108.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 108.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 108.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 108.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 108.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 108.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 108.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 108.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 107.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 107.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 107.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 107.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 107.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 107.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 106.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 106.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 106.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 105.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 105.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 105.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 105.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 105.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 105.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 105.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 105.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 104.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 104.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 104.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 104.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 104.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 104.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 104.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 104.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 104.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 103.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 103.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 103.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 103.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 103.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 103.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 103.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 103.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 103.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 103.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 102.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 102.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 102.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 102.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 102.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 102.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 102.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 102.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 101.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 101.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 101.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 101.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 101.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 101.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 100.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 100.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 100.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 100.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 100.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 100.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 100.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 99.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 99.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 99.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 99.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 99.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 99.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 99.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 99.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 99.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 98.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 98.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 98.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 98.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 98.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 98.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 98.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 97.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 97.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 97.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 97.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 97.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 97.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 97.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 97.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 97.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 96.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 96.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 96.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 96.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 96.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 96.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 96.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 96.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 96.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 96.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 96.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 95.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 95.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 95.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 95.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 95.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 94.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 94.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 94.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 94.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 94.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 94.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 94.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 94.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 94.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 94.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 93.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 93.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 93.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 93.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 93.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 93.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 93.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 93.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 93.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 93.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 92.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 92.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 92.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 92.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 92.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 92.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 92.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 92.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 91.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 91.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 91.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 91.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 91.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 91.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 90.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 90.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 90.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 90.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 90.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 90.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 90.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 90.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 90.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 90.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 89.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 89.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 89.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 89.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 89.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 89.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 88.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 88.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 88.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 88.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 88.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 88.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 88.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 88.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 88.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 88.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 87.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 87.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 87.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 87.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 87.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 87.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 87.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 87.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 87.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 87.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 86.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 86.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 86.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 86.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 86.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 85.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 85.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 85.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 85.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 84.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 84.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 84.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 83.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 83.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 82.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 82.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 82.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 82.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 82.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 82.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 82.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 81.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 81.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 81.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 80.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 80.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 80.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 79.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 79.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 79.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 79.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 79.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 79.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 78.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 77.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 77.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 77.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 76.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 76.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 76.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 75.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 74.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 74.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 73.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 72.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 72.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 71.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 69.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 67.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 66.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 65.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 95.3
FF:10164-103B2 76 years, female 95.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.8
Pig sample Sample description nTPM
Caudate
nTPM: 237.9
Samples: 4

Max nTPM: 309.5
Min nTPM: 183.6
Sample A Female 183.6
Sample B Female 246.2
Sample C Male 309.5
Sample D Male 212.1

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