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CCDC85B
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • CCDC85B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:206.2 nTPM
FANTOM5:135.5 Scaled Tags Per Million
Pig:125.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA054415
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 206.2
Samples: 300

Max nTPM: 865.9
Min nTPM: 53.8
Std nTPM: 93.6
Median nTPM: 194.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 865.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 624.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 575.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 508.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 499.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 465.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 445.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 411.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 409.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 388.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 387.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 375.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 373.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 371.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 367.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 362.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 358.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 354.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 344.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 331.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 331.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 331.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 330.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 326.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 325.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 323.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 321.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 320.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 316.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 311.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 310.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 308.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 308.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 306.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 304.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 300.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 292.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 288.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 287.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 286.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 285.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 283.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 283.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 281.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 279.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 276.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 276.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 273.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 272.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 272.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 271.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 270.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 270.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 269.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 269.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 268.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 265.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 264.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 264.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 264.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 263.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 261.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 258.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 256.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 256.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 256.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 255.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 255.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 251.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 251.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 250.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 250.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 247.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 246.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 244.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 243.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 242.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 240.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 239.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 239.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 238.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 238.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 236.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 235.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 235.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 234.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 232.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 231.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 231.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 230.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 229.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 229.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 228.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 228.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 227.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 227.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 227.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 226.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 225.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 223.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 222.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 222.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 222.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 221.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 220.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 220.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 220.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 219.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 219.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 219.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 218.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 218.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 218.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 216.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 215.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 215.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 215.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 214.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 214.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 214.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 213.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 212.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 211.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 210.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 210.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 209.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 206.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 205.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 203.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 203.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 203.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 201.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 200.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 199.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 198.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 198.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 197.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 197.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 197.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 196.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 196.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 196.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 196.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 196.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 195.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 195.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 195.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 195.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 195.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 194.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 194.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 193.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 193.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 192.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 192.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 192.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 192.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 190.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 189.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 189.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 188.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 188.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 188.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 187.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 186.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 186.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 186.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 185.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 184.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 184.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 184.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 183.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 182.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 181.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 179.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 179.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 179.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 178.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 177.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 176.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 176.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 176.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 176.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 175.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 175.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 175.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 175.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 174.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 174.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 174.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 173.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 173.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 172.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 171.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 171.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 170.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 170.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 170.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 170.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 169.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 168.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 167.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 166.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 165.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 164.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 164.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 163.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 163.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 163.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 162.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 162.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 162.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 161.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 161.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 160.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 158.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 158.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 157.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 156.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 156.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 153.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 153.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 152.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 152.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 151.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 151.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 149.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 147.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 146.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 145.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 145.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 145.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 142.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 142.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 141.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 140.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 140.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 138.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 138.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 137.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 136.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 136.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 136.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 135.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 134.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 134.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 133.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 133.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 132.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 131.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 128.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 125.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 123.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 123.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 122.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 122.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 120.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 120.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 119.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 118.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 116.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 116.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 116.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 113.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 112.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 111.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 111.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 111.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 110.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 106.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 104.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 103.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 103.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 102.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 101.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 98.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 92.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 89.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 87.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 85.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 85.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 84.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 83.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 81.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 81.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 78.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 78.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 74.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 73.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 72.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 71.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 70.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 70.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 68.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 64.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 59.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 58.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 57.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 53.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 53.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

135.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 135.5
FF:10164-103B2 76 years, female 135.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.2
Pig sample Sample description nTPM
Caudate
nTPM: 125.2
Samples: 4

Max nTPM: 146.3
Min nTPM: 99.4
Sample A Female 99.4
Sample B Female 140.2
Sample C Male 146.3
Sample D Male 114.7

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