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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PLAAT3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:97.7 nTPM
FANTOM5:81.4 Scaled Tags Per Million
Pig:23.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA058997
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 97.7
Samples: 300

Max nTPM: 426.3
Min nTPM: 22.7
Std nTPM: 44.1
Median nTPM: 87.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 426.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 268.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 226.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 224.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 220.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 217.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 208.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 207.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 205.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 203.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 202.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 201.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 194.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 191.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 180.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 170.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 168.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 167.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 166.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 162.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 161.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 160.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 159.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 159.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 154.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 154.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 153.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 152.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 151.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 150.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 149.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 149.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 148.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 147.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 147.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 147.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 142.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 142.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 141.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 140.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 140.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 139.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 138.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 137.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 135.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 135.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 132.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 131.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 130.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 130.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 129.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 129.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 129.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 128.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 128.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 127.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 127.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 126.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 126.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 126.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 126.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 124.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 124.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 124.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 124.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 122.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 121.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 120.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 120.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 120.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 118.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 117.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 117.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 117.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 116.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 115.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 115.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 115.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 115.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 114.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 113.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 113.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 113.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 112.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 112.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 112.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 111.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 111.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 111.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 110.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 109.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 109.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 109.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 109.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 109.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 108.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 108.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 107.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 107.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 107.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 106.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 106.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 106.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 105.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 105.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 105.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 104.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 104.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 103.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 103.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 103.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 102.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 102.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 101.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 101.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 101.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 100.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 100.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 99.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 98.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 98.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 97.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 97.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 97.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 96.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 95.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 95.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 95.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 95.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 95.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 94.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 94.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 94.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 94.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 93.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 93.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 93.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 92.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 92.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 92.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 91.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 91.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 90.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 89.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 88.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 88.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 88.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 88.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 88.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 87.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 87.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 87.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 86.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 86.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 85.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 85.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 85.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 85.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 84.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 84.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 83.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 82.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 82.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 82.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 82.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 81.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 81.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 81.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 81.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 81.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 81.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 80.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 80.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 80.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 79.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 79.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 79.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 79.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 78.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 78.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 78.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 78.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 78.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 78.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 78.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 78.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 77.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 77.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 77.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 76.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 76.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 75.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 75.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 75.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 75.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 75.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 74.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 74.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 74.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 73.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 73.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 72.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 72.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 72.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 72.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 71.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 71.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 71.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 71.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 71.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 70.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 70.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 70.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 70.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 70.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 69.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 69.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 69.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 69.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 69.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 68.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 68.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 68.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 67.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 67.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 66.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 66.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 66.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 66.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 66.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 66.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 66.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 66.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 65.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 65.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 65.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 65.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 64.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 64.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 63.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 63.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 62.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 62.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 62.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 61.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 61.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 61.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 60.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 60.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 60.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 60.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 59.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 59.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 59.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 59.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 59.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 58.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 58.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 58.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 57.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 57.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 57.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 57.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 57.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 57.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 56.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 56.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 56.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 55.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 55.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 54.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 54.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 52.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 52.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 52.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 52.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 51.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 51.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 50.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 50.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 49.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 48.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 48.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 48.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 47.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 46.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 45.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 45.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 45.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 44.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 44.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 42.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 41.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 37.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 35.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 34.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 32.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 22.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.4
FF:10164-103B2 76 years, female 81.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.1
Pig sample Sample description nTPM
Caudate
nTPM: 23.1
Samples: 4

Max nTPM: 26.4
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 25.4
Sample C Male 26.4
Sample D Male 20.9

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