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BASP1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • BASP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:76.6 nTPM
FANTOM5:390.0 Scaled Tags Per Million
Pig:135.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045218Antibody HPA050333
Glial cells HighHigh
Neuronal cells HighLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 76.6
Samples: 300

Max nTPM: 386.3
Min nTPM: 15.6
Std nTPM: 47.0
Median nTPM: 72.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 386.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 385.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 306.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 232.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 168.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 166.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 165.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 164.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 161.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 157.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 152.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 146.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 145.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 145.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 143.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 139.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 138.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 137.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 134.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 134.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 133.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 131.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 131.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 131.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 129.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 129.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 129.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 129.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 128.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 128.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 128.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 128.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 125.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 124.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 124.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 124.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 122.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 121.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 120.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 119.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 119.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 119.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 119.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 118.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 116.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 115.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 115.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 114.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 114.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 114.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 113.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 113.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 112.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 112.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 112.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 111.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 111.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 111.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 110.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 109.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 108.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 108.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 107.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 106.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 106.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 104.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 103.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 103.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 102.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 102.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 101.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 101.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 101.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 100.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 99.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 99.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 99.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 98.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 98.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 98.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 97.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 96.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 96.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 95.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 95.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 95.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 94.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 94.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 94.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 93.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 93.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 92.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 92.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 92.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 92.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 91.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 91.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 91.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 91.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 90.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 90.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 90.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 89.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 88.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 88.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 88.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 87.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 87.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 87.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 87.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 87.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 86.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 86.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 85.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 85.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 85.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 84.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 83.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 83.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 82.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 82.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 82.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 82.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 81.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 81.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 80.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 79.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 79.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 79.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 78.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 78.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 78.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 77.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 77.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 77.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 76.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 76.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 76.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 76.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 75.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 74.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 74.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 74.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 74.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 74.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 73.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 73.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 73.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 72.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 72.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 72.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 71.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 71.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 70.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 70.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 69.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 69.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 68.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 68.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 68.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 67.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 66.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 65.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 65.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 65.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 63.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 63.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 62.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 62.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 62.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 61.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 60.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 60.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 59.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 59.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 59.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 58.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 58.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 57.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 57.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 56.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 56.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 56.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 55.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 55.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 55.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 54.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 54.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 54.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 54.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 54.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 53.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 52.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 52.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 52.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 51.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 51.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 51.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 50.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 50.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 50.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 48.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 48.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 48.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 48.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 47.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 47.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 46.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 46.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 46.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 45.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 45.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 44.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 44.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 44.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 44.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 43.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 43.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 43.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 43.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 43.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 43.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 42.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 42.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 42.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 42.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 42.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 40.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 40.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 39.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 39.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 39.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 39.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 38.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 38.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 38.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 38.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 38.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 37.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 37.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 36.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 36.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 36.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 36.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 36.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 35.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 35.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 35.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 35.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 33.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 33.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 33.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 33.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 32.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 32.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 31.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 31.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 30.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 30.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 30.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 30.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 29.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 29.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 28.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 28.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 28.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 28.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 27.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 27.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 27.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 27.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 26.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 26.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 25.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 25.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 25.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 24.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 23.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 23.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 23.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 22.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 22.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 22.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 22.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 22.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 22.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 22.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 21.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 20.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 19.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 18.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 18.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 17.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 17.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 17.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 17.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 17.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 15.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

390.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 390.0
FF:10164-103B2 76 years, female 390.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.4
Pig sample Sample description nTPM
Caudate
nTPM: 135.4
Samples: 4

Max nTPM: 149.4
Min nTPM: 112.9
Sample A Female 139.5
Sample B Female 139.8
Sample C Male 149.4
Sample D Male 112.9

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