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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • EIF3K
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:179.9 nTPM
FANTOM5:117.8 Scaled Tags Per Million
Pig:164.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045446
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 179.9
Samples: 300

Max nTPM: 346.7
Min nTPM: 94.9
Std nTPM: 42.4
Median nTPM: 169.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 346.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 340.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 338.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 336.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 317.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 306.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 298.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 295.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 289.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 285.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 283.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 278.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 273.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 266.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 264.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 260.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 257.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 256.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 249.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 249.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 243.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 242.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 241.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 239.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 239.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 238.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 237.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 235.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 233.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 231.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 230.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 230.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 228.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 227.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 226.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 225.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 225.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 224.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 224.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 224.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 223.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 222.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 222.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 220.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 219.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 217.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 217.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 217.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 216.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 216.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 215.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 214.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 213.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 213.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 212.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 212.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 212.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 211.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 211.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 211.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 210.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 208.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 207.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 207.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 206.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 205.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 205.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 205.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 203.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 203.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 203.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 203.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 202.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 202.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 202.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 201.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 200.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 200.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 200.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 200.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 199.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 199.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 199.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 198.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 198.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 197.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 197.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 196.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 196.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 195.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 194.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 194.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 193.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 193.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 192.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 192.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 191.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 190.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 190.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 189.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 189.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 188.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 188.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 186.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 186.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 186.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 185.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 183.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 183.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 182.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 182.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 182.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 182.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 181.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 181.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 181.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 180.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 180.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 180.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 180.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 179.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 179.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 179.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 179.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 178.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 178.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 178.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 178.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 178.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 177.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 176.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 175.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 175.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 174.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 174.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 174.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 174.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 174.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 173.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 173.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 173.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 173.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 172.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 172.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 172.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 172.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 172.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 171.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 170.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 169.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 169.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 169.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 169.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 168.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 168.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 167.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 167.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 167.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 167.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 167.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 167.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 166.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 166.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 165.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 165.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 165.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 164.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 164.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 164.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 164.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 164.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 163.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 163.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 162.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 162.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 161.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 161.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 161.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 160.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 160.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 160.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 160.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 160.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 160.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 160.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 160.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 159.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 159.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 159.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 158.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 158.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 157.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 157.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 157.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 157.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 156.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 156.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 156.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 155.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 155.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 155.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 155.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 154.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 154.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 154.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 154.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 154.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 154.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 154.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 154.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 153.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 153.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 153.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 153.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 153.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 152.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 152.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 152.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 152.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 152.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 151.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 151.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 151.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 151.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 151.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 151.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 150.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 150.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 149.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 149.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 149.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 149.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 149.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 148.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 148.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 148.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 148.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 148.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 147.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 147.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 146.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 145.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 145.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 145.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 145.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 145.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 145.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 144.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 144.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 144.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 144.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 143.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 142.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 142.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 141.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 141.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 141.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 141.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 140.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 140.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 140.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 140.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 140.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 139.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 139.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 138.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 138.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 138.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 137.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 137.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 137.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 137.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 137.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 137.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 136.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 135.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 135.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 135.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 135.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 134.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 133.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 133.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 131.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 131.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 130.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 130.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 129.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 128.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 124.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 121.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 120.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 114.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 114.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 111.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 104.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 100.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 99.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 94.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

117.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 117.8
FF:10164-103B2 76 years, female 117.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.4
Pig sample Sample description nTPM
Caudate
nTPM: 164.4
Samples: 4

Max nTPM: 180.1
Min nTPM: 138.1
Sample A Female 164.9
Sample B Female 180.1
Sample C Male 174.4
Sample D Male 138.1

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