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  • SUMMARY

  • TISSUE

  • BRAIN

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:141.5 nTPM
FANTOM5:584.4 Scaled Tags Per Million
Pig:253.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002242Antibody CAB001513Antibody CAB019952Antibody CAB080301
Glial cells Not detectedLowMediumMedium
Neuronal cells LowLowMediumHigh









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 141.5
Samples: 300

Max nTPM: 485.8
Min nTPM: 64.2
Std nTPM: 50.0
Median nTPM: 127.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 485.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 382.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 345.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 330.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 308.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 305.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 293.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 284.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 283.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 269.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 268.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 258.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 256.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 247.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 241.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 238.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 237.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 231.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 227.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 224.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 222.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 221.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 217.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 217.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 212.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 212.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 208.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 207.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 197.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 195.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 192.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 192.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 190.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 185.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 183.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 182.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 181.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 180.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 179.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 178.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 178.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 177.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 174.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 172.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 171.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 170.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 169.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 169.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 168.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 167.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 165.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 165.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 163.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 160.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 160.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 160.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 159.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 159.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 159.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 159.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 158.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 158.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 157.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 157.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 156.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 156.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 155.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 155.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 154.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 154.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 153.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 153.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 152.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 152.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 151.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 151.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 151.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 151.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 151.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 151.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 150.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 150.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 149.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 149.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 148.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 148.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 148.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 148.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 147.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 147.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 147.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 147.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 147.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 146.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 145.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 145.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 145.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 145.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 144.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 144.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 144.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 144.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 143.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 143.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 143.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 143.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 142.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 141.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 141.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 140.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 140.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 140.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 139.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 139.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 139.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 137.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 137.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 137.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 137.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 136.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 136.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 136.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 136.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 136.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 136.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 136.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 135.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 135.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 135.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 135.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 135.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 135.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 135.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 134.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 134.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 134.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 132.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 132.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 131.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 131.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 131.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 131.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 130.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 130.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 130.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 129.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 128.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 128.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 128.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 127.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 127.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 127.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 127.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 127.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 126.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 126.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 126.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 126.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 126.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 126.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 126.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 126.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 126.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 125.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 125.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 125.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 125.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 125.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 125.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 125.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 125.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 125.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 125.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 124.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 124.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 124.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 122.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 122.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 122.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 122.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 122.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 122.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 122.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 122.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 121.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 121.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 121.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 120.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 120.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 120.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 120.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 120.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 120.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 120.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 119.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 119.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 119.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 119.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 118.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 118.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 118.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 117.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 117.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 117.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 117.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 116.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 116.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 116.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 116.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 116.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 116.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 116.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 115.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 115.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 115.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 115.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 115.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 115.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 115.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 115.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 114.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 114.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 114.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 113.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 113.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 113.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 113.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 112.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 112.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 112.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 112.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 111.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 111.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 110.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 110.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 110.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 110.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 109.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 109.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 109.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 108.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 108.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 108.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 107.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 107.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 106.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 106.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 106.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 106.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 106.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 106.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 105.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 105.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 104.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 104.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 104.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 104.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 104.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 104.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 103.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 103.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 102.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 102.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 102.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 101.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 101.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 101.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 99.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 98.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 97.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 96.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 95.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 94.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 94.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 94.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 93.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 93.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 93.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 92.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 92.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 91.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 89.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 89.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 89.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 88.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 87.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 86.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 86.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 85.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 85.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 84.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 83.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 82.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 80.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 80.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 68.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 64.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

584.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 584.4
FF:10164-103B2 76 years, female 584.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.1
Pig sample Sample description nTPM
Caudate
nTPM: 253.1
Samples: 4

Max nTPM: 280.8
Min nTPM: 224.6
Sample A Female 224.6
Sample B Female 246.6
Sample C Male 280.8
Sample D Male 260.3

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