PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		80.892
Mouse brain, Intensity
Ponsi 		91.349
RNA expressioni
HPA Brain:102.1 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:53.2 nTPM
Mouse:34.5 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA037991
Medulla oblongata mean intensity 80.892
intensityi
FRONT BACK
Nucleus of the solitary tract 61.805
Raphe magnus nucleus 20.549
Cochlear nucleus 23.540
Lateral paragigantocellular nucleus 15.238
Raphe pallidus nucleus 80.892
Facial nucleus 13.871
Hypoglossal nucleus 21.291
Ambiguus nucleus 34.353
External cuneate nucleus 23.357
Inferior olivary nucleus 30.703
Raphe obscures nucleus 31.578
Dorsal motor nucleus of vagus 55.493
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 26.967
Parabrachial nucleus 44.617
Principle sensory trigeminal nucleus 24.119
Locus coeruleus 91.349
Pontine nucleus 20.678
Vestibular nucleus 33.501
Pontine reticular nucleus, oral 31.549
Lateral lemniscus 25.910
Superior paraolivary nucleus 18.567

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 102.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 75.0
2188 Female, age 91, both hemispheres 91.6
2301 Female, age 85, both hemispheres 84.0
2090 Male, age 80, both hemispheres 69.7
1984 Male, age 76, both hemispheres 54.4
Area postrema
nTPM: 57.7
2306 Male, age 80, both hemispheres 96.3
2799 Male, age 61, both hemispheres 40.7
2054 Male, age 76, both hemispheres 36.1
Dorsal cochlear nucleus
nTPM: 62.2
2187 Female, age 91, both hemispheres 85.2
2802 Male, age 74, right hemisphere 67.6
2378 Male, age 80, both hemispheres 66.9
2058 Male, age 76, both hemispheres 47.0
2370 Male, age 61, both hemispheres 44.3
Dorsal medullary reticular nucleus
nTPM: 69.7
2040 Female, age 85, both hemispheres 70.8
2088 Male, age 76, both hemispheres 70.7
2373 Male, age 61, both hemispheres 67.5
Dorsal motor vagal complex
nTPM: 49.8
2185 Male, age 76, both hemispheres 79.1
2000 Male, age 74, unknown 57.9
2133 Female, age 91, both hemispheres 57.9
2643 Male, age 74, both hemispheres 54.2
2844 Male, age 55, unknown 39.6
2807 Female, age 85, both hemispheres 39.5
2813 Female, age 72, unknown 35.4
2797 Male, age 61, both hemispheres 34.6
Dorsal tegmental nucleus
nTPM: 56.1
2083 Male, age 80, both hemispheres 80.6
2326 Male, age 74, both hemispheres 62.8
1936 Male, age 76, left hemisphere 47.9
2358 Male, age 61, both hemispheres 33.2
Dorsolateral tegmental area
nTPM: 63.6
2751 Female, age 85, both hemispheres 97.4
2654 Male, age 80, both hemispheres 78.4
2337 Male, age 61, both hemispheres 63.2
2360 Male, age 74, both hemispheres 46.6
2141 Male, age 76, both hemispheres 32.3
Gigantocellular reticular nuclei, medullary
nTPM: 75.8
2314 Male, age 61, both hemispheres 109.3
2387 Female, age 91, both hemispheres 85.4
1876 Female, age 85, both hemispheres 79.7
2022 Male, age 76, right hemisphere 67.7
2310 Male, age 80, both hemispheres 66.0
2462 Male, age 74, both hemispheres 46.8
Gigantocellular reticular nuclei, pars
nTPM: 60.5
2336 Male, age 61, both hemispheres 67.5
2706 Male, age 80, both hemispheres 63.6
2330 Male, age 80, both hemispheres 63.5
2084 Female, age 85, both hemispheres 61.5
2168 Male, age 76, both hemispheres 46.3
Inferior olive
nTPM: 76.3
2178 Male, age 61, both hemispheres 92.0
2563 Male, age 74, both hemispheres 78.0
2085 Female, age 85, both hemispheres 77.8
2628 Female, age 91, both hemispheres 71.4
2379 Male, age 80, both hemispheres 62.3
Kolliker-Fuse nucleus
nTPM: 65.5
2793 Female, age 91, left hemisphere 96.1
2163 Male, age 80, both hemispheres 60.3
2315 Male, age 76, right hemisphere 40.0
Lateral lemniscal nuclei
nTPM: 65.8
2320 Female, age 91, left hemisphere 88.1
2746 Female, age 85, left hemisphere 66.6
2453 Male, age 74, right hemisphere 65.3
2036 Male, age 80, both hemispheres 59.3
2169 Male, age 76, both hemispheres 50.0
Lateral medullary reticular nucleus
nTPM: 80.2
2852 Male, age 80, both hemispheres 105.6
2305 Male, age 74, both hemispheres 96.2
2190 Female, age 85, both hemispheres 80.7
2374 Male, age 61, both hemispheres 74.6
2044 Male, age 76, both hemispheres 62.5
2804 Female, age 91, both hemispheres 61.8
Lateral parabrachial nucleus
nTPM: 69.5
2792 Male, age 76, both hemispheres 84.1
2013 Male, age 80, both hemispheres 80.2
2790 Male, age 61, both hemispheres 61.0
2139 Female, age 85, right hemisphere 52.9
Lateral vestibular nucleus
nTPM: 70.0
2311 Male, age 80, both hemispheres 76.5
2184 Male, age 76, both hemispheres 63.6
Locus coeruleus
nTPM: 34.8
2162 Male, age 80, both hemispheres 48.1
2317 Female, age 72, unknown 39.2
2123 Female, age 91, both hemispheres 36.7
2720 Male, age 74, both hemispheres 34.9
2014 Male, age 55, unknown 30.9
2788 Male, age 74, unknown 26.9
1980 Male, age 76, both hemispheres 26.5
Medial olivary nucleus
nTPM: 87.4
1943 Male, age 61, both hemispheres 113.5
1962 Male, age 76, both hemispheres 100.6
2851 Male, age 80, both hemispheres 71.1
2138 Female, age 91, both hemispheres 64.4
Medial parabrachial nucleus
nTPM: 76.8
2463 Female, age 85, right hemisphere 99.9
2170 Female, age 91, both hemispheres 98.3
2786 Male, age 76, both hemispheres 63.5
2156 Male, age 61, both hemispheres 61.3
2854 Male, age 80, both hemispheres 61.0
Medial periolivary nuclei
nTPM: 61.7
2458 Female, age 91, both hemispheres 78.6
2081 Male, age 80, both hemispheres 69.3
2791 Male, age 74, right hemisphere 64.9
2063 Male, age 76, both hemispheres 53.2
2171 Female, age 85, both hemispheres 42.4
Medial vestibular nucleus
nTPM: 60.3
2803 Female, age 91, both hemispheres 75.4
2801 Male, age 74, both hemispheres 74.5
2093 Male, age 80, both hemispheres 73.7
2624 Male, age 61, both hemispheres 53.5
2743 Female, age 85, both hemispheres 51.3
2134 Male, age 76, both hemispheres 33.5
Motor facial nucleus
nTPM: 66.0
2126 Male, age 61, both hemispheres 87.4
2365 Male, age 74, right hemisphere 73.7
2697 Female, age 85, both hemispheres 69.3
2795 Female, age 91, both hemispheres 65.8
2327 Male, age 80, both hemispheres 50.8
2062 Male, age 76, both hemispheres 49.2
Motor hypoglossal nucleus
nTPM: 69.7
2125 Female, age 91, both hemispheres 95.5
2182 Male, age 80, both hemispheres 92.6
2132 Female, age 85, both hemispheres 84.6
2461 Male, age 61, both hemispheres 42.1
2277 Male, age 76, both hemispheres 33.6
Motor trigeminal nucleus
nTPM: 64.8
2560 Male, age 74, both hemispheres 84.5
2321 Female, age 91, both hemispheres 78.1
2309 Male, age 76, both hemispheres 60.8
2335 Male, age 61, both hemispheres 51.4
2079 Male, age 80, both hemispheres 49.1
Nuclei of the trapezoid body
nTPM: 56.2
2368 Female, age 91, both hemispheres 75.3
2166 Male, age 80, both hemispheres 70.1
1983 Male, age 76, both hemispheres 49.3
2159 Male, age 61, both hemispheres 48.4
2735 Female, age 85, both hemispheres 38.1
Nucleus ambiguus
nTPM: 92.0
2071 Male, age 76, both hemispheres 104.5
2096 Female, age 85, both hemispheres 79.5
Nucleus cuneatus
nTPM: 73.4
2380 Male, age 80, both hemispheres 91.2
2100 Male, age 76, both hemispheres 88.9
2381 Male, age 80, both hemispheres 86.7
2808 Female, age 85, both hemispheres 75.9
2564 Male, age 74, both hemispheres 75.5
2131 Male, age 76, both hemispheres 66.6
2376 Male, age 61, both hemispheres 66.6
2805 Female, age 91, both hemispheres 63.4
2562 Male, age 61, both hemispheres 46.1
Nucleus gracilis
nTPM: 90.1
2382 Male, age 80, both hemispheres 111.5
2299 Female, age 85, both hemispheres 79.4
2627 Male, age 74, both hemispheres 79.3
Nucleus raphe magnus
nTPM: 56.7
2459 Female, age 91, both hemispheres 86.5
2328 Male, age 80, both hemispheres 69.5
2051 Male, age 76, both hemispheres 65.4
2455 Male, age 74, both hemispheres 62.4
2172 Female, age 85, both hemispheres 29.8
2160 Male, age 61, both hemispheres 27.0
Nucleus raphe obscurus
nTPM: 102.1
2142 Male, age 76, midline 111.0
2845 Female, age 85, midline 104.4
2800 Male, age 61, midline 90.9
Nucleus raphe pallidus
nTPM: 98.6
1924 Male, age 61, midline 111.9
2145 Male, age 76, midline 109.2
2183 Male, age 80, midline 74.8
Nucleus tractus solitarii
nTPM: 33.1
2656 Male, age 76, both hemispheres 36.8
2307 Male, age 80, both hemispheres 36.6
2144 Female, age 91, right hemisphere 31.7
2191 Female, age 85, both hemispheres 27.4
Paramedian reticular nucleus
nTPM: 61.7
2057 Male, age 80, both hemispheres 74.0
2052 Male, age 76, both hemispheres 69.9
2050 Female, age 85, both hemispheres 55.6
2313 Male, age 61, both hemispheres 47.2
Parvicellular reticular nuclei
nTPM: 68.6
2119 Male, age 80, both hemispheres 72.2
2095 Male, age 76, both hemispheres 72.1
2558 Male, age 74, both hemispheres 61.6
Parvicellular reticular nuclei, medullary
nTPM: 62.0
2189 Female, age 91, both hemispheres 71.5
2091 Female, age 85, both hemispheres 60.4
2181 Male, age 80, left hemisphere 54.0
Pedunculopontine tegmental nucleus
nTPM: 56.1
2334 Male, age 80, both hemispheres 61.7
1921 Female, age 85, both hemispheres 56.2
2338 Male, age 61, both hemispheres 50.4
Peritrigeminal nucleus
nTPM: 73.2
2067 Female, age 85, both hemispheres 75.7
2179 Male, age 61, both hemispheres 73.7
2136 Male, age 76, both hemispheres 70.1
Pontine nuclei
nTPM: 72.1
2454 Male, age 74, left hemisphere 105.4
2109 Female, age 72, unknown 89.2
2319 Female, age 91, both hemispheres 88.1
2115 Male, age 80, left hemisphere 71.4
1863 Male, age 55, unknown 66.4
1968 Male, age 76, left hemisphere 64.6
2787 Female, age 85, both hemispheres 48.3
2727 Male, age 61, right hemisphere 43.1
Pontine raphe nucleus
nTPM: 42.3
2853 Male, age 76, midline 45.2
2122 Female, age 85, midline 39.4
Posteroventral cochlear nucleus
nTPM: 76.3
2135 Female, age 91, both hemispheres 102.9
2341 Male, age 80, both hemispheres 93.6
2070 Male, age 76, both hemispheres 80.9
2752 Female, age 85, both hemispheres 53.1
2371 Male, age 61, both hemispheres 51.3
Prepositus hypoglossal nucleus
nTPM: 63.6
2855 Female, age 85, right hemisphere 76.5
2086 Male, age 80, both hemispheres 50.6
Principal sensory trigeminal nucleus
nTPM: 57.9
2367 Female, age 91, left hemisphere 90.7
2324 Male, age 76, both hemispheres 58.0
2008 Male, age 80, left hemisphere 48.2
2158 Male, age 61, both hemispheres 34.7
Reticular pontine nucleus, caudal
nTPM: 80.5
2457 Female, age 91, both hemispheres 102.3
2559 Male, age 74, both hemispheres 100.1
2092 Male, age 76, both hemispheres 67.2
2332 Male, age 80, right hemisphere 52.3
Reticular pontine nucleus, oral
nTPM: 77.9
2361 Male, age 74, both hemispheres 94.2
2366 Female, age 91, both hemispheres 87.4
1939 Male, age 80, both hemispheres 73.4
2167 Male, age 76, both hemispheres 68.8
2012 Female, age 85, both hemispheres 65.7
Reticulotegmental nucleus
nTPM: 62.7
2322 Female, age 91, both hemispheres 77.8
2452 Male, age 74, both hemispheres 72.8
2333 Male, age 80, both hemispheres 64.7
2325 Male, age 76, both hemispheres 35.3
Spinal trigeminal nucleus, caudal
nTPM: 76.4
2312 Male, age 61, both hemispheres 83.0
2447 Male, age 76, both hemispheres 82.2
2308 Male, age 80, both hemispheres 81.9
2390 Female, age 91, both hemispheres 70.9
2642 Male, age 74, both hemispheres 64.1
Spinal trigeminal nucleus, interpolar
nTPM: 53.0
2389 Female, age 91, both hemispheres 67.0
2033 Male, age 80, both hemispheres 61.2
2386 Female, age 85, both hemispheres 59.9
2625 Male, age 61, both hemispheres 41.1
2066 Male, age 76, right hemisphere 36.0
Spinal trigeminal nucleus, oral
nTPM: 65.7
2164 Male, age 80, both hemispheres 72.3
1978 Male, age 76, both hemispheres 70.5
2737 Female, age 85, both hemispheres 54.2
Spinal vestibular nucleus
nTPM: 73.2
2748 Male, age 76, both hemispheres 96.3
2384 Male, age 74, both hemispheres 85.3
2186 Female, age 91, both hemispheres 81.5
2780 Male, age 80, both hemispheres 69.7
2806 Female, age 85, both hemispheres 69.5
2796 Male, age 61, both hemispheres 37.0
Subcoeruleus area
nTPM: 64.4
2369 Female, age 85, left hemisphere 104.4
1958 Male, age 80, both hemispheres 56.3
2451 Male, age 74, both hemispheres 55.6
2089 Male, age 76, left hemisphere 55.4
2323 Female, age 91, left hemisphere 50.1
Superior olive
nTPM: 69.9
2020 Male, age 76, both hemispheres 75.0
2561 Female, age 91, both hemispheres 74.4
2329 Male, age 80, right hemisphere 73.7
2364 Male, age 74, right hemisphere 71.7
1875 Female, age 85, both hemispheres 54.8
Superior vestibular nucleus
nTPM: 56.1
2015 Male, age 80, both hemispheres 67.4
2061 Male, age 76, both hemispheres 59.5
2383 Male, age 74, both hemispheres 41.4
Ventral medullary reticular nucleus
nTPM: 85.8
2060 Male, age 76, both hemispheres 89.0
2372 Male, age 61, both hemispheres 82.6
Ventral periolivary nuclei
nTPM: 54.3
2023 Male, age 76, both hemispheres 76.5
2165 Male, age 80, both hemispheres 58.8
2794 Female, age 91, left hemisphere 52.1
2130 Female, age 85, both hemispheres 30.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 72.1
2118 Male, age 80, both hemispheres 92.8
2180 Male, age 61, both hemispheres 76.8
2741 Female, age 85, both hemispheres 67.3
1986 Male, age 76, both hemispheres 62.4
2302 Female, age 91, both hemispheres 61.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 68.6
2456 Female, age 91, both hemispheres 93.8
2449 Male, age 74, both hemispheres 69.9
2161 Male, age 80, both hemispheres 64.5
2840 Female, age 85, both hemispheres 62.8
1959 Male, age 76, both hemispheres 62.7
2359 Male, age 61, both hemispheres 57.8

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 45.8
FF:10182-103D2 60 years, female 47.4
FF:10165-103B3 76 years, female 44.1
Medulla oblongata
Scaled Tags Per Million: 46.7
FF:10038-101F2 18-64 years, mixed 68.5
FF:10174-103C3 60 years, female 40.2
FF:10155-103A2 76 years, female 31.5
Pons
Scaled Tags Per Million: 67.1
FF:10033-101E6 18-54 years, mixed 67.1

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 53.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 53.2
Samples: 4

Max nTPM: 59.8
Min nTPM: 43.7
Sample A Female 54.9
Sample B Female 43.7
Sample C Male 54.3
Sample D Male 59.8
Pons
nTPM: 45.1
Samples: 4

Max nTPM: 51.4
Min nTPM: 38.2
Sample A Female 47.3
Sample B Female 38.2
Sample C Male 43.6
Sample D Male 51.4

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 34.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 34.5
Samples: 4

Max nTPM: 37.0
Min nTPM: 33.3
Sample A Male 34.2
Sample B Male 33.3
Sample C Female 33.5
Sample D Female 37.0

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 7.4
70565891 Antisense, RP_050628_01_F02, Mouse strain C57BL/6J (56 days, male) 7.4
Pons
Expression energy: 7.6
70565891 Antisense, RP_050628_01_F02, Mouse strain C57BL/6J (56 days, male) 7.6

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