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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • CLDN5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:142.3 nTPM
FANTOM5:75.4 Scaled Tags Per Million
Pig:17.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB002607
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 142.3
Samples: 300

Max nTPM: 736.8
Min nTPM: 13.8
Std nTPM: 115.9
Median nTPM: 105.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 736.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 696.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 686.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 678.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 614.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 566.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 544.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 483.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 445.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 415.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 409.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 390.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 384.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 381.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 380.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 378.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 355.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 346.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 344.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 342.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 340.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 335.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 328.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 316.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 308.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 307.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 293.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 282.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 258.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 252.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 252.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 250.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 248.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 246.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 245.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 241.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 240.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 239.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 235.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 235.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 232.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 232.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 230.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 227.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 226.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 223.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 223.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 221.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 221.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 220.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 219.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 212.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 211.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 210.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 209.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 208.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 205.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 200.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 198.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 191.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 190.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 189.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 186.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 185.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 184.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 183.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 180.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 179.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 178.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 178.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 176.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 176.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 174.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 174.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 174.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 173.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 173.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 172.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 170.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 170.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 169.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 169.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 168.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 168.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 167.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 166.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 166.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 165.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 165.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 163.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 163.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 160.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 160.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 158.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 153.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 153.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 152.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 150.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 147.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 147.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 146.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 145.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 145.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 144.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 142.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 141.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 141.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 137.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 137.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 135.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 135.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 134.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 134.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 133.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 133.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 132.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 131.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 131.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 129.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 127.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 126.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 126.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 125.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 125.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 124.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 123.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 122.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 120.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 119.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 119.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 119.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 117.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 115.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 114.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 114.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 113.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 113.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 113.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 112.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 112.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 112.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 112.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 111.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 109.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 108.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 108.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 107.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 106.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 105.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 105.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 105.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 103.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 103.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 103.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 102.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 102.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 101.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 101.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 100.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 100.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 99.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 98.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 97.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 97.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 96.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 96.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 96.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 95.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 94.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 94.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 92.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 91.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 90.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 90.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 89.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 89.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 89.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 89.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 88.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 87.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 87.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 86.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 85.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 85.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 84.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 84.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 84.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 84.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 82.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 82.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 81.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 81.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 80.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 80.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 80.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 78.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 78.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 78.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 78.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 78.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 77.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 77.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 76.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 76.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 76.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 76.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 74.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 74.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 74.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 74.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 73.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 73.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 73.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 72.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 72.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 72.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 71.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 71.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 70.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 70.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 69.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 68.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 68.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 67.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 67.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 66.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 66.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 66.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 65.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 65.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 65.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 65.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 65.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 65.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 65.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 64.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 64.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 63.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 63.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 63.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 62.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 62.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 62.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 62.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 62.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 61.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 61.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 60.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 59.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 59.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 59.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 58.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 57.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 57.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 56.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 56.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 56.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 56.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 56.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 55.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 55.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 53.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 53.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 53.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 53.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 51.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 50.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 49.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 49.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 47.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 47.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 47.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 47.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 46.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 46.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 45.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 45.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 45.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 44.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 44.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 41.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 41.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 41.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 40.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 39.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 39.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 37.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 35.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 32.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 28.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 26.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 23.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 22.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 20.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 19.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 13.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.4
FF:10164-103B2 76 years, female 75.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.1
Pig sample Sample description nTPM
Caudate
nTPM: 17.1
Samples: 4

Max nTPM: 19.5
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 19.5
Sample C Male 17.0
Sample D Male 18.9

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