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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:95.8 nTPM
FANTOM5:88.9 Scaled Tags Per Million
Pig:61.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044038
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 95.8
Samples: 300

Max nTPM: 255.3
Min nTPM: 22.3
Std nTPM: 41.9
Median nTPM: 90.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 255.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 255.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 255.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 227.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 222.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 211.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 209.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 200.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 192.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 191.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 184.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 182.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 174.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 171.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 171.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 170.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 166.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 163.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 162.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 161.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 161.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 159.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 158.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 158.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 157.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 156.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 155.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 155.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 154.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 153.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 147.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 146.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 146.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 143.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 142.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 141.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 140.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 140.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 139.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 138.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 137.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 135.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 135.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 134.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 134.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 133.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 133.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 133.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 132.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 131.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 130.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 130.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 130.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 129.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 129.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 128.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 128.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 127.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 126.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 124.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 124.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 123.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 122.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 122.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 122.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 122.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 122.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 122.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 121.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 121.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 120.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 120.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 119.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 119.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 119.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 119.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 117.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 117.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 115.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 115.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 115.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 115.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 115.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 115.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 115.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 114.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 114.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 113.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 112.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 112.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 111.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 111.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 110.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 109.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 109.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 109.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 108.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 108.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 107.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 107.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 106.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 106.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 106.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 105.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 105.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 104.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 103.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 103.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 102.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 102.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 102.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 100.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 100.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 99.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 99.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 99.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 99.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 98.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 98.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 98.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 97.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 97.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 97.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 97.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 96.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 96.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 96.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 95.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 95.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 94.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 94.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 94.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 94.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 93.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 93.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 93.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 93.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 93.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 93.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 92.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 91.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 91.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 91.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 91.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 91.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 90.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 90.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 89.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 89.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 89.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 89.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 89.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 89.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 89.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 89.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 87.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 87.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 87.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 87.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 87.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 86.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 86.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 85.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 85.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 85.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 84.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 84.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 83.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 83.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 83.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 83.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 83.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 82.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 82.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 81.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 80.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 80.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 79.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 79.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 79.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 79.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 79.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 78.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 78.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 78.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 78.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 78.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 78.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 78.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 77.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 75.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 75.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 74.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 74.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 74.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 74.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 73.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 73.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 73.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 73.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 73.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 73.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 71.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 71.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 71.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 70.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 70.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 70.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 69.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 68.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 68.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 67.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 67.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 67.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 66.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 66.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 66.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 66.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 66.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 65.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 65.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 65.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 64.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 63.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 62.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 62.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 62.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 62.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 61.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 61.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 61.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 61.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 60.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 60.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 59.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 58.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 58.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 58.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 58.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 58.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 57.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 57.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 56.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 56.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 56.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 56.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 55.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 55.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 55.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 54.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 53.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 53.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 53.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 52.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 52.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 51.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 51.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 51.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 51.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 50.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 47.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 47.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 47.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 47.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 45.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 45.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 43.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 43.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 42.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 42.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 42.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 40.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 40.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 39.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 39.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 37.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 37.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 37.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 35.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 34.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 34.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 34.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 34.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 33.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 33.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 31.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 30.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 29.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 29.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 27.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 25.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 22.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.9
FF:10164-103B2 76 years, female 88.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.6
Pig sample Sample description nTPM
Caudate
nTPM: 61.6
Samples: 4

Max nTPM: 70.7
Min nTPM: 50.7
Sample A Female 50.7
Sample B Female 70.7
Sample C Male 66.9
Sample D Male 58.0

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