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  • TISSUE

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  • NDUFA4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:196.4 nTPM
FANTOM5:674.8 Scaled Tags Per Million
Pig:484.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA078265
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 196.4
Samples: 300

Max nTPM: 629.5
Min nTPM: 70.5
Std nTPM: 82.6
Median nTPM: 181.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 629.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 611.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 605.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 587.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 490.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 446.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 434.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 384.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 370.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 366.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 365.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 362.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 349.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 338.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 326.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 320.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 318.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 315.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 315.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 314.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 312.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 307.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 307.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 304.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 302.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 297.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 293.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 293.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 292.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 290.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 287.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 284.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 279.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 279.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 278.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 277.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 276.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 273.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 273.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 270.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 265.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 263.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 263.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 263.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 263.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 260.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 259.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 257.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 255.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 255.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 255.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 254.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 254.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 252.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 251.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 248.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 248.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 244.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 243.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 242.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 241.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 241.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 240.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 239.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 238.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 237.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 234.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 233.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 233.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 232.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 232.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 232.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 230.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 230.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 230.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 229.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 228.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 227.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 226.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 226.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 225.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 225.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 224.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 223.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 223.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 223.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 222.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 222.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 221.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 221.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 219.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 219.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 218.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 217.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 217.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 216.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 215.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 213.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 212.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 212.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 211.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 211.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 211.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 210.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 209.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 208.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 208.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 208.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 207.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 207.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 206.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 201.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 201.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 200.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 199.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 199.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 199.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 198.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 197.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 197.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 197.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 196.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 195.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 194.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 194.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 192.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 191.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 191.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 190.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 190.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 189.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 189.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 188.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 188.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 188.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 188.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 187.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 187.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 187.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 187.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 187.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 187.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 186.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 185.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 185.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 184.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 184.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 183.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 183.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 182.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 181.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 181.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 180.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 179.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 179.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 179.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 178.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 178.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 178.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 177.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 177.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 176.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 176.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 176.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 176.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 175.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 175.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 174.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 174.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 174.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 174.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 174.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 173.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 173.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 173.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 172.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 170.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 170.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 168.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 168.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 168.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 168.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 167.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 165.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 164.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 164.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 164.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 164.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 163.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 163.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 162.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 162.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 161.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 159.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 158.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 158.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 158.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 157.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 157.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 155.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 154.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 154.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 154.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 154.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 154.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 152.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 152.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 151.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 149.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 149.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 148.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 148.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 148.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 148.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 146.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 146.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 146.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 145.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 145.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 144.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 144.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 144.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 143.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 142.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 142.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 140.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 140.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 139.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 139.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 138.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 138.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 137.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 137.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 136.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 135.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 135.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 135.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 134.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 133.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 133.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 133.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 132.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 131.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 129.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 127.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 126.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 126.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 126.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 125.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 125.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 123.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 123.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 122.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 122.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 122.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 122.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 122.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 120.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 118.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 118.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 116.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 116.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 116.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 116.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 116.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 114.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 114.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 114.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 113.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 112.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 111.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 110.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 109.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 108.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 108.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 106.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 106.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 106.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 106.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 104.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 104.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 103.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 103.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 101.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 101.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 101.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 100.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 100.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 96.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 96.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 95.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 94.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 91.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 86.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 85.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 83.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 82.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 70.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

674.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 674.8
FF:10164-103B2 76 years, female 674.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

484.1
Pig sample Sample description nTPM
Caudate
nTPM: 484.2
Samples: 4

Max nTPM: 584.8
Min nTPM: 422.8
Sample A Female 422.8
Sample B Female 488.0
Sample C Male 584.8
Sample D Male 441.0

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