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MYL6B
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  • SUMMARY

  • TISSUE

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  • MYL6B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:143.5 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:39.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA038887Antibody HPA046859Antibody HPA063034
Glial cells Not detectedNot detectedNot detected
Neuronal cells LowLowNot detected






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 143.5
Samples: 300

Max nTPM: 338.8
Min nTPM: 38.8
Std nTPM: 46.8
Median nTPM: 138.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 338.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 303.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 291.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 282.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 278.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 278.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 267.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 262.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 258.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 254.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 247.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 240.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 238.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 237.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 236.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 231.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 229.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 224.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 223.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 222.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 222.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 221.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 216.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 215.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 213.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 213.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 210.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 210.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 207.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 206.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 205.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 205.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 205.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 204.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 202.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 200.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 198.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 194.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 194.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 193.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 193.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 191.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 191.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 190.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 190.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 189.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 188.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 188.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 186.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 185.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 185.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 184.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 182.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 182.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 180.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 180.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 179.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 178.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 178.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 175.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 173.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 172.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 171.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 171.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 171.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 170.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 170.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 169.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 168.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 167.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 165.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 165.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 165.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 165.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 164.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 164.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 163.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 163.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 162.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 161.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 160.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 159.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 159.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 158.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 158.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 158.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 157.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 157.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 156.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 156.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 156.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 155.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 155.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 155.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 154.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 154.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 154.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 154.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 154.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 153.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 153.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 153.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 153.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 152.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 151.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 151.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 151.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 151.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 151.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 151.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 150.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 150.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 149.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 149.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 148.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 148.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 148.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 148.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 148.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 148.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 147.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 147.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 147.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 147.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 147.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 146.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 146.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 146.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 146.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 144.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 144.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 144.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 143.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 142.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 142.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 141.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 141.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 140.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 139.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 139.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 139.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 139.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 139.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 138.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 138.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 138.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 138.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 138.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 138.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 138.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 137.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 137.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 137.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 137.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 137.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 134.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 134.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 134.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 134.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 133.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 132.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 132.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 132.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 132.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 132.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 131.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 131.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 131.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 131.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 130.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 130.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 130.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 130.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 130.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 130.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 130.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 130.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 130.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 129.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 129.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 129.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 128.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 127.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 126.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 126.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 126.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 126.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 125.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 124.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 124.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 124.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 123.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 123.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 122.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 122.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 122.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 122.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 122.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 121.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 121.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 121.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 120.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 120.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 119.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 119.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 119.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 118.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 118.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 118.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 118.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 118.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 117.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 116.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 115.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 115.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 115.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 114.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 113.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 113.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 113.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 113.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 112.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 112.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 111.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 111.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 111.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 111.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 110.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 110.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 110.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 110.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 109.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 108.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 108.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 108.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 108.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 107.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 107.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 107.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 106.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 105.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 105.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 103.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 102.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 102.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 102.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 101.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 101.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 101.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 101.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 101.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 100.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 100.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 100.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 100.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 100.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 99.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 98.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 98.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 98.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 97.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 97.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 95.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 95.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 95.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 94.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 93.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 92.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 91.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 90.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 90.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 90.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 89.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 88.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 88.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 88.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 87.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 87.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 86.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 85.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 83.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 83.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 79.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 79.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 78.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 77.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 71.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 71.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 70.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 70.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 68.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 68.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 65.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 62.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 62.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 61.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 46.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 38.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.0
FF:10164-103B2 76 years, female 66.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.9
Pig sample Sample description nTPM
Caudate
nTPM: 39.9
Samples: 4

Max nTPM: 52.8
Min nTPM: 33.1
Sample A Female 33.4
Sample B Female 40.2
Sample C Male 52.8
Sample D Male 33.1

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