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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • OPALIN
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:87.6 nTPM
FANTOM5:121.8 Scaled Tags Per Million
Pig:132.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA014372
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 87.6
Samples: 300

Max nTPM: 564.1
Min nTPM: 8.2
Std nTPM: 64.4
Median nTPM: 71.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 564.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 426.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 365.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 334.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 317.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 301.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 283.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 234.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 226.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 224.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 222.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 218.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 211.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 193.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 192.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 186.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 183.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 173.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 169.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 168.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 168.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 166.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 165.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 165.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 165.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 164.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 162.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 161.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 159.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 158.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 158.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 157.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 156.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 155.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 151.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 150.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 149.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 148.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 147.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 144.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 142.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 140.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 140.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 140.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 138.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 138.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 136.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 135.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 131.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 130.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 130.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 126.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 125.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 124.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 123.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 122.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 121.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 121.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 121.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 120.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 119.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 118.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 118.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 118.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 117.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 116.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 116.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 116.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 114.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 114.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 113.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 113.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 112.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 112.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 111.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 111.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 110.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 110.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 108.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 108.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 108.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 107.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 106.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 106.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 106.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 105.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 104.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 104.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 102.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 102.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 101.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 101.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 99.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 99.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 98.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 97.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 96.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 96.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 96.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 94.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 93.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 93.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 92.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 91.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 91.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 91.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 91.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 90.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 90.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 90.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 89.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 89.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 88.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 88.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 87.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 87.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 87.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 87.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 87.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 86.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 86.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 84.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 83.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 83.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 82.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 82.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 81.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 81.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 80.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 80.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 80.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 79.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 78.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 77.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 77.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 76.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 75.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 74.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 74.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 74.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 73.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 73.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 72.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 72.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 72.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 72.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 72.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 71.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 71.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 71.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 71.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 70.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 70.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 69.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 69.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 69.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 68.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 68.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 68.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 68.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 68.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 67.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 67.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 67.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 66.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 66.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 66.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 66.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 65.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 65.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 65.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 64.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 63.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 63.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 63.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 63.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 63.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 63.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 62.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 62.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 61.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 61.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 61.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 61.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 60.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 60.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 60.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 60.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 60.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 59.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 58.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 58.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 58.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 58.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 58.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 57.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 57.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 57.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 57.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 56.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 56.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 54.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 53.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 53.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 52.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 52.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 51.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 51.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 51.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 50.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 50.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 50.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 50.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 49.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 48.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 48.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 48.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 47.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 47.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 47.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 47.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 47.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 46.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 45.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 44.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 44.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 44.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 44.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 44.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 43.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 42.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 42.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 42.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 42.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 42.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 41.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 41.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 41.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 41.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 41.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 41.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 40.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 40.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 39.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 39.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 39.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 39.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 38.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 38.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 38.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 38.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 38.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 37.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 37.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 37.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 36.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 36.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 35.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 35.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 35.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 35.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 35.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 35.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 33.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 33.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 33.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 33.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 32.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 32.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 32.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 30.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 30.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 29.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 29.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 29.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 28.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 28.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 28.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 28.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 27.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 27.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 27.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 27.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 26.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 26.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 25.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 25.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 24.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 24.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 22.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 20.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 20.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 18.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 18.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 17.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 16.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 15.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 12.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 8.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

121.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 121.8
FF:10164-103B2 76 years, female 121.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.1
Pig sample Sample description nTPM
Caudate
nTPM: 132.1
Samples: 4

Max nTPM: 146.4
Min nTPM: 115.5
Sample A Female 146.4
Sample B Female 115.5
Sample C Male 134.2
Sample D Male 132.2

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