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STMN3
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • STMN3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:206.4 nTPM
FANTOM5:384.2 Scaled Tags Per Million
Pig:219.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA012947
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 206.4
Samples: 300

Max nTPM: 394.1
Min nTPM: 37.7
Std nTPM: 68.4
Median nTPM: 209.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 394.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 385.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 384.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 365.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 356.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 355.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 350.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 344.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 340.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 336.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 334.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 333.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 325.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 323.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 322.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 318.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 315.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 313.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 311.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 311.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 308.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 307.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 303.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 301.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 300.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 297.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 297.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 295.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 291.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 289.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 286.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 285.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 284.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 283.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 282.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 282.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 282.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 281.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 280.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 279.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 277.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 277.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 276.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 274.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 274.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 273.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 272.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 272.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 271.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 270.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 269.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 269.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 268.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 268.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 267.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 267.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 266.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 265.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 265.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 264.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 264.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 263.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 263.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 263.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 262.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 262.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 261.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 261.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 260.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 259.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 259.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 259.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 258.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 258.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 256.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 256.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 255.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 253.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 252.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 251.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 251.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 250.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 250.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 249.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 247.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 246.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 245.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 245.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 245.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 244.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 243.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 243.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 241.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 240.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 240.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 239.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 238.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 237.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 237.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 237.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 236.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 236.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 235.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 234.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 234.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 231.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 231.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 230.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 230.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 230.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 230.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 229.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 229.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 229.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 228.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 227.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 227.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 226.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 225.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 225.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 225.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 225.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 224.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 223.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 223.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 222.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 222.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 221.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 221.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 220.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 220.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 220.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 220.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 219.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 219.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 219.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 219.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 216.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 215.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 214.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 214.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 214.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 214.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 213.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 213.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 213.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 212.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 212.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 211.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 209.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 209.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 208.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 207.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 207.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 207.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 206.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 204.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 204.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 204.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 203.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 203.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 203.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 201.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 200.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 200.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 199.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 199.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 199.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 198.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 198.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 196.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 196.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 196.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 196.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 195.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 195.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 194.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 194.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 193.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 192.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 192.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 189.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 188.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 188.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 187.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 186.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 183.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 183.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 183.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 182.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 182.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 182.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 180.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 180.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 178.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 178.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 177.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 176.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 176.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 174.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 174.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 173.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 173.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 173.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 172.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 172.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 171.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 168.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 168.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 167.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 166.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 166.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 166.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 165.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 165.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 165.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 163.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 163.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 163.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 162.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 162.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 161.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 161.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 160.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 159.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 156.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 154.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 152.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 152.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 152.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 151.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 151.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 150.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 150.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 149.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 149.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 149.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 147.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 147.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 146.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 144.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 142.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 140.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 137.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 136.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 135.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 135.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 134.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 131.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 130.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 130.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 128.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 128.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 128.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 127.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 126.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 126.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 125.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 121.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 120.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 120.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 119.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 118.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 118.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 117.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 117.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 116.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 115.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 114.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 114.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 113.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 112.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 112.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 111.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 109.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 109.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 109.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 108.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 107.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 104.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 104.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 104.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 104.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 100.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 95.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 94.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 93.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 88.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 83.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 83.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 77.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 72.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 70.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 65.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 65.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 63.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 42.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 37.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

384.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 384.2
FF:10164-103B2 76 years, female 384.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.7
Pig sample Sample description nTPM
Caudate
nTPM: 219.7
Samples: 4

Max nTPM: 256.7
Min nTPM: 189.0
Sample A Female 189.0
Sample B Female 243.6
Sample C Male 256.7
Sample D Male 189.5

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