We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TCAF1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TCAF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:40.8 nTPM
FANTOM5:179.8 Scaled Tags Per Million
Pig:104.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011732
Glial cells Not detected
Neuronal cells Not detected

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.8
Samples: 300

Max nTPM: 133.7
Min nTPM: 10.4
Std nTPM: 21.8
Median nTPM: 37.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 133.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 109.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 103.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 100.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 97.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 95.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 91.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 91.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 89.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 88.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 85.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 81.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 81.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 81.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 80.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 78.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 78.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 77.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 77.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 75.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 74.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 74.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 73.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 72.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 72.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 72.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 71.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 71.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 69.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 69.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 68.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 68.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 68.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 67.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 67.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 67.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 66.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 66.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 65.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 65.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 65.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 65.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 65.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 63.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 63.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 63.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 63.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 63.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 62.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 62.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 61.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 61.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 61.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 60.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 60.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 60.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 59.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 59.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 59.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 59.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 59.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 59.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 59.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 59.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 58.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 58.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 58.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 58.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 58.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 58.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 57.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 56.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 56.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 56.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 56.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 56.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 55.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 55.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 55.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 54.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 54.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 54.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 54.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 54.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 54.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 54.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 53.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 53.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 53.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 53.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 53.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 52.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 52.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 51.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 51.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 51.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 51.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 50.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 50.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 49.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 49.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 49.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 49.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 49.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 48.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 48.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 48.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 47.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 47.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 46.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 46.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 46.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 46.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 45.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 45.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 45.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 44.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 44.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 44.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 44.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 44.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 43.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 42.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 42.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 42.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 42.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 42.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 42.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 41.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 41.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 41.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 40.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 40.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 40.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 39.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 39.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 38.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 38.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 38.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 38.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 38.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 38.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 38.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 38.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 37.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 37.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 37.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 37.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 37.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 36.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 36.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 36.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 36.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 35.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 35.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 35.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 35.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 34.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 34.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 33.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 33.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 33.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 33.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 32.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 32.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 32.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 32.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 32.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 31.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 31.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 31.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 31.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 31.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 31.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 31.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 31.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 31.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 30.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 29.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 29.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 29.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 29.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 29.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 28.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 28.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 28.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 27.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 27.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 27.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 27.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 27.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 26.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 26.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 26.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 26.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 26.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 25.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 25.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 25.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 25.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 24.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 24.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 24.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 24.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 24.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 23.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 23.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 23.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 23.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 23.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 23.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 23.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 23.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 23.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 22.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 22.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 22.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 22.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 22.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 22.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 21.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 21.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 21.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 21.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 21.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 20.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 20.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 20.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 20.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 20.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 20.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 20.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 20.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 20.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 19.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 19.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 19.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 19.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 19.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 19.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 19.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 19.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 19.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 19.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 18.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 18.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 18.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 18.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 18.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 18.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 17.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 17.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 17.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 17.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 17.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 17.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 17.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 17.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 17.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 17.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 17.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 17.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 17.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 17.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 16.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 16.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 16.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 16.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 16.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 16.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 16.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 16.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 15.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 15.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 15.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 15.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 15.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 14.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 14.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 14.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 14.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 13.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 13.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 13.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 13.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 13.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 12.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 12.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 11.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 10.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 10.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 10.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 179.8
FF:10164-103B2 76 years, female 179.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.3
Pig sample Sample description nTPM
Caudate
nTPM: 104.3
Samples: 4

Max nTPM: 121.0
Min nTPM: 92.0
Sample A Female 92.0
Sample B Female 102.2
Sample C Male 121.0
Sample D Male 102.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo