We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GDI1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GDI1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:319.6 nTPM
FANTOM5:325.7 Scaled Tags Per Million
Pig:478.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049290Antibody HPA057668Antibody CAB012979
Glial cells MediumNot detectedLow
Neuronal cells MediumMediumMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 319.6
Samples: 300

Max nTPM: 522.5
Min nTPM: 174.5
Std nTPM: 70.1
Median nTPM: 315.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 522.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 511.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 506.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 487.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 478.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 477.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 461.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 458.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 452.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 452.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 451.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 449.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 446.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 444.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 441.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 435.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 433.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 430.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 429.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 428.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 426.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 423.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 422.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 421.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 421.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 420.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 420.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 419.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 413.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 410.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 410.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 409.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 409.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 408.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 408.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 408.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 406.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 404.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 402.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 401.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 397.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 395.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 395.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 395.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 394.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 393.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 392.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 392.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 392.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 391.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 388.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 386.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 385.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 384.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 383.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 383.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 383.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 381.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 380.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 379.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 379.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 378.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 378.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 377.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 377.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 376.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 376.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 375.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 373.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 372.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 372.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 370.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 370.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 369.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 368.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 368.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 367.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 367.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 366.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 366.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 365.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 364.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 364.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 363.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 363.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 362.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 360.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 360.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 359.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 359.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 358.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 357.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 357.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 356.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 356.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 356.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 355.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 354.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 353.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 353.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 353.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 352.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 352.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 352.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 351.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 350.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 349.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 348.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 347.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 345.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 345.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 344.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 344.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 340.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 340.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 340.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 339.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 337.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 337.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 337.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 336.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 336.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 333.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 332.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 331.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 331.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 330.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 329.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 327.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 327.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 327.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 326.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 326.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 326.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 325.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 325.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 325.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 324.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 324.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 323.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 322.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 322.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 322.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 321.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 320.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 320.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 318.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 317.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 317.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 317.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 313.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 313.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 312.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 311.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 311.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 310.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 309.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 309.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 308.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 308.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 307.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 306.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 306.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 306.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 306.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 306.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 305.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 304.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 304.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 303.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 301.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 301.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 301.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 301.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 300.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 299.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 299.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 299.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 298.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 297.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 297.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 297.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 297.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 296.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 296.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 294.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 293.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 292.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 290.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 290.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 290.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 290.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 289.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 289.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 289.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 288.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 286.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 285.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 283.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 282.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 281.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 281.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 281.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 280.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 280.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 279.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 278.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 277.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 277.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 276.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 276.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 276.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 276.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 276.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 276.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 275.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 275.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 275.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 274.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 274.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 271.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 271.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 270.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 270.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 270.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 269.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 269.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 269.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 268.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 267.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 267.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 267.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 266.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 264.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 263.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 262.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 262.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 260.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 260.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 259.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 257.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 256.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 254.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 252.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 252.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 251.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 250.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 250.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 250.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 250.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 250.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 248.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 243.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 242.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 242.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 241.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 241.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 239.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 235.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 235.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 234.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 233.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 233.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 233.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 229.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 229.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 227.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 226.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 226.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 225.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 224.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 224.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 223.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 222.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 220.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 220.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 220.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 219.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 219.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 217.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 216.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 215.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 214.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 214.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 211.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 211.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 209.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 206.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 205.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 201.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 199.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 197.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 194.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 193.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 191.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 188.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 186.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 177.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 175.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 174.5
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

325.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 325.7
FF:10164-103B2 76 years, female 325.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

478.5
Pig sample Sample description nTPM
Caudate
nTPM: 478.5
Samples: 4

Max nTPM: 564.2
Min nTPM: 400.2
Sample A Female 400.2
Sample B Female 511.9
Sample C Male 564.2
Sample D Male 437.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo