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PFDN6
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PFDN6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:97.6 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:47.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043032Antibody HPA048123
Glial cells Not detectedNot detected
Neuronal cells MediumMedium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 97.6
Samples: 300

Max nTPM: 204.9
Min nTPM: 47.6
Std nTPM: 25.0
Median nTPM: 94.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 204.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 187.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 174.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 174.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 169.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 166.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 156.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 154.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 151.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 150.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 150.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 147.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 145.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 144.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 142.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 141.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 137.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 137.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 136.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 135.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 134.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 134.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 134.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 134.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 133.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 131.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 130.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 129.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 129.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 128.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 128.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 128.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 126.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 126.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 125.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 125.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 125.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 125.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 123.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 123.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 123.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 122.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 122.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 122.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 122.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 122.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 122.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 120.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 120.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 120.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 119.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 119.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 119.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 119.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 119.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 118.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 118.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 117.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 117.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 116.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 116.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 116.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 116.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 116.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 115.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 114.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 114.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 114.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 114.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 114.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 114.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 114.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 113.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 113.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 113.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 113.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 113.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 112.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 112.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 112.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 112.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 111.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 111.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 110.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 110.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 109.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 109.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 108.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 108.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 108.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 107.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 107.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 107.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 107.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 107.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 106.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 106.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 106.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 105.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 105.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 104.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 104.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 104.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 103.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 103.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 103.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 103.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 103.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 103.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 102.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 102.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 102.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 102.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 102.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 102.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 101.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 100.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 100.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 99.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 99.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 99.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 98.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 98.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 98.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 98.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 97.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 97.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 97.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 97.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 97.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 96.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 96.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 96.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 96.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 96.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 96.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 96.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 96.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 95.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 95.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 95.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 95.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 95.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 95.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 95.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 95.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 94.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 94.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 94.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 94.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 94.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 94.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 93.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 93.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 93.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 93.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 93.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 93.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 93.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 92.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 92.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 92.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 92.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 92.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 92.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 91.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 91.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 91.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 91.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 91.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 91.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 91.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 90.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 90.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 90.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 90.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 90.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 90.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 90.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 90.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 90.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 90.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 89.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 89.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 89.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 89.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 89.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 89.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 88.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 87.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 87.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 87.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 87.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 87.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 87.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 86.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 86.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 86.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 85.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 85.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 85.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 85.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 84.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 84.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 84.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 84.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 84.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 84.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 84.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 84.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 83.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 83.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 83.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 83.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 83.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 82.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 82.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 82.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 81.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 81.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 81.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 81.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 81.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 81.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 80.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 80.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 80.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 79.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 79.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 79.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 78.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 78.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 78.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 78.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 78.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 77.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 77.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 77.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 77.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 76.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 76.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 76.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 75.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 75.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 75.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 74.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 74.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 73.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 73.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 73.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 73.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 72.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 72.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 72.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 72.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 72.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 71.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 71.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 71.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 71.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 70.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 70.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 70.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 69.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 69.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 68.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 68.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 67.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 67.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 67.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 67.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 65.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 65.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 65.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 65.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 64.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 64.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 63.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 63.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 63.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 62.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 60.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 60.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 60.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 60.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 58.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 57.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 56.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 56.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 55.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 54.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 53.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 50.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 50.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 47.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 47.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.8
FF:10164-103B2 76 years, female 20.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.2
Pig sample Sample description nTPM
Caudate
nTPM: 47.2
Samples: 4

Max nTPM: 57.6
Min nTPM: 37.7
Sample A Female 48.2
Sample B Female 45.4
Sample C Male 57.6
Sample D Male 37.7

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