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NAP1L4
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  • TISSUE

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  • STRUCTURE

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  • NAP1L4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:91.5 nTPM
FANTOM5:102.6 Scaled Tags Per Million
Pig:52.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB011567
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 91.5
Samples: 300

Max nTPM: 173.9
Min nTPM: 43.5
Std nTPM: 17.0
Median nTPM: 88.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 173.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 162.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 143.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 140.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 139.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 137.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 134.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 134.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 131.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 128.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 128.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 125.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 122.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 122.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 122.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 120.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 118.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 117.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 117.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 117.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 116.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 116.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 116.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 116.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 116.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 114.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 114.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 113.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 112.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 112.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 110.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 110.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 110.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 110.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 110.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 109.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 109.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 109.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 108.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 108.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 108.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 108.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 106.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 106.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 106.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 106.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 106.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 106.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 105.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 105.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 105.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 105.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 105.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 104.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 104.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 104.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 104.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 103.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 103.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 103.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 103.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 103.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 102.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 101.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 101.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 101.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 100.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 100.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 100.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 100.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 100.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 100.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 99.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 99.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 99.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 99.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 99.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 99.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 99.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 98.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 98.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 98.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 98.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 98.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 98.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 98.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 97.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 97.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 97.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 97.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 97.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 97.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 97.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 96.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 96.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 96.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 96.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 96.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 96.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 96.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 96.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 96.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 95.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 95.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 95.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 95.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 94.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 94.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 93.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 93.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 93.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 93.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 93.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 93.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 93.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 92.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 92.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 92.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 92.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 92.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 92.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 92.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 92.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 92.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 92.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 92.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 91.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 91.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 91.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 91.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 91.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 90.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 90.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 90.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 90.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 90.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 90.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 89.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 89.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 89.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 89.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 89.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 89.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 88.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 88.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 88.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 88.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 88.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 88.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 88.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 88.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 88.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 88.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 88.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 87.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 87.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 87.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 87.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 87.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 87.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 87.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 87.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 87.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 87.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 87.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 86.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 86.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 86.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 86.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 86.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 86.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 86.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 86.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 86.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 85.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 85.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 85.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 85.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 85.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 85.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 85.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 85.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 84.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 84.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 84.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 84.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 84.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 84.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 84.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 84.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 84.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 84.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 83.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 83.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 83.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 83.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 83.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 83.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 83.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 82.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 82.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 82.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 82.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 82.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 82.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 82.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 82.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 81.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 81.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 81.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 81.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 81.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 81.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 81.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 81.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 81.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 81.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 81.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 80.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 80.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 80.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 80.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 80.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 80.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 79.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 79.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 79.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 79.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 78.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 78.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 78.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 78.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 78.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 78.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 78.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 77.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 77.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 77.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 77.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 77.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 77.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 77.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 77.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 77.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 77.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 76.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 76.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 76.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 76.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 76.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 75.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 75.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 75.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 74.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 74.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 74.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 74.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 74.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 74.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 74.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 74.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 74.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 73.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 73.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 73.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 73.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 73.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 72.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 72.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 72.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 71.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 71.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 71.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 71.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 70.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 70.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 70.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 70.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 70.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 70.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 68.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 68.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 68.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 67.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 67.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 67.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 66.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 66.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 65.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 63.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 62.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 60.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 60.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 55.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 52.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 43.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 102.6
FF:10164-103B2 76 years, female 102.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.9
Pig sample Sample description nTPM
Caudate
nTPM: 52.9
Samples: 4

Max nTPM: 59.1
Min nTPM: 48.8
Sample A Female 49.0
Sample B Female 54.8
Sample C Male 59.1
Sample D Male 48.8

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