We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TMSB4X
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TMSB4X
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:2811.3 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:1115.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB033806
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2811.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2811.3
Samples: 300

Max nTPM: 8754.7
Min nTPM: 1543.1
Std nTPM: 845.5
Median nTPM: 2623.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 8754.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 6275.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 6167.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 5832.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 5696.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 5580.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 5238.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 5008.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 4967.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 4713.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4621.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 4594.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4557.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 4556.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 4515.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4499.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4440.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 4406.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 4131.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 4081.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 4065.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 3933.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 3908.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 3812.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3796.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3793.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 3782.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3771.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3748.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 3730.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3730.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 3727.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 3664.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 3658.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 3637.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3636.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 3621.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3618.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 3606.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 3570.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 3570.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 3566.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3552.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3549.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3547.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3478.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 3458.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 3440.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3412.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 3411.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3380.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 3374.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3352.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3343.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3323.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 3312.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 3273.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 3271.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3252.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3243.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 3223.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3223.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 3203.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 3199.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3196.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 3173.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 3155.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 3139.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 3137.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 3136.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 3135.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 3122.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3104.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 3102.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 3074.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 3073.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3068.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 3059.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 3056.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 3052.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 3044.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 3041.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 3031.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 3022.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 3000.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2997.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 2986.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2984.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 2980.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 2968.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2965.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2961.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2958.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2946.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2940.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2916.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 2915.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2908.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2893.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 2885.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 2875.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2874.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 2871.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2854.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 2850.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2845.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2844.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 2844.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 2840.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2837.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2835.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 2833.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2828.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 2823.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2813.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2806.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 2805.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 2793.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 2780.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2773.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2769.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2752.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2748.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 2748.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 2746.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2743.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 2742.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2741.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 2734.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2734.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2730.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2727.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2716.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2706.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2706.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2700.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2674.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2674.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2672.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2667.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2667.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2665.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2663.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2662.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2661.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2657.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2645.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2638.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2631.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2626.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2619.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2617.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2617.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 2608.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 2603.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2601.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2597.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2596.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 2594.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 2590.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2589.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2578.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2576.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 2573.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2568.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 2567.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2562.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 2558.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 2555.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 2552.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 2551.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 2550.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2546.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 2543.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 2541.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2538.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2533.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2522.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2520.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 2513.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2513.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2511.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 2497.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2488.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 2471.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2469.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 2467.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 2465.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 2463.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2461.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2460.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2460.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2460.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 2454.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2449.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2448.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2438.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2428.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 2422.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 2422.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2413.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 2413.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 2412.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2407.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 2397.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 2396.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 2394.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2390.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2381.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2379.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2373.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2369.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2369.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2368.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2367.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2357.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 2334.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2329.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2327.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2325.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2319.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 2314.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 2312.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2312.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2308.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2306.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2299.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 2298.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2293.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 2288.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2268.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2262.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 2259.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2259.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2257.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 2251.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 2246.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 2233.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2227.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 2225.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 2223.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2219.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2215.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2211.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2193.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2192.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2188.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 2153.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 2149.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2148.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 2144.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 2144.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2130.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2127.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2126.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2125.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2106.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2102.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2087.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 2085.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 2084.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2079.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2073.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 2068.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 2061.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 2056.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2046.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 2028.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2025.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2016.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 2007.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 2002.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1997.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1989.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1987.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1974.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1963.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1949.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1936.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1933.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1931.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1926.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1918.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1879.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1860.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1858.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1854.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1824.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1821.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1816.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1794.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1790.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1756.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1740.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1686.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1675.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1641.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1626.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1554.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1543.1
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.0
FF:10164-103B2 76 years, female 19.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1115.7
Pig sample Sample description nTPM
Caudate
nTPM: 1115.7
Samples: 4

Max nTPM: 1256.5
Min nTPM: 912.9
Sample A Female 1256.5
Sample B Female 1229.1
Sample C Male 1064.3
Sample D Male 912.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo