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PPP3R1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PPP3R1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:111.5 nTPM
FANTOM5:589.8 Scaled Tags Per Million
Pig:367.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047157Antibody CAB005610
Glial cells Not detectedHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 111.5
Samples: 300

Max nTPM: 400.1
Min nTPM: 22.1
Std nTPM: 62.1
Median nTPM: 106.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 400.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 276.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 257.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 252.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 247.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 240.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 236.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 234.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 225.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 221.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 221.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 217.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 217.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 216.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 215.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 214.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 211.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 210.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 209.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 209.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 207.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 206.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 206.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 206.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 201.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 200.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 200.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 195.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 194.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 192.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 192.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 191.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 191.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 189.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 189.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 189.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 189.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 186.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 186.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 186.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 185.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 184.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 184.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 184.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 183.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 183.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 182.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 181.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 180.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 179.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 179.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 178.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 177.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 177.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 175.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 174.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 173.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 170.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 169.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 164.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 164.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 164.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 164.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 163.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 162.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 162.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 161.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 161.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 160.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 160.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 159.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 158.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 158.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 158.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 158.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 157.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 156.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 156.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 155.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 152.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 151.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 150.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 150.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 150.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 149.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 148.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 148.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 148.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 147.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 147.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 146.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 146.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 143.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 143.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 141.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 141.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 141.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 140.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 140.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 139.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 138.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 138.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 138.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 137.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 136.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 134.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 133.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 132.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 132.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 131.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 131.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 130.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 128.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 128.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 127.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 127.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 127.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 127.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 126.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 126.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 125.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 125.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 124.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 124.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 124.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 124.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 124.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 123.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 123.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 123.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 122.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 120.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 118.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 118.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 116.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 114.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 114.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 113.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 112.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 112.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 111.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 110.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 110.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 110.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 109.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 109.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 108.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 107.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 106.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 106.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 105.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 103.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 103.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 102.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 102.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 101.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 101.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 100.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 100.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 99.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 98.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 98.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 98.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 97.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 97.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 97.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 96.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 95.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 94.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 93.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 93.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 93.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 93.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 92.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 92.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 92.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 91.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 91.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 91.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 90.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 88.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 88.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 87.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 85.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 85.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 85.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 84.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 84.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 84.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 84.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 84.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 84.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 81.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 80.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 80.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 78.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 76.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 76.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 74.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 74.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 74.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 74.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 68.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 68.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 67.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 66.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 66.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 65.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 63.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 62.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 62.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 62.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 62.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 61.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 60.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 60.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 59.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 59.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 59.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 57.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 57.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 57.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 56.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 56.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 55.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 55.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 52.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 52.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 51.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 51.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 50.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 49.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 48.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 47.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 47.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 47.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 46.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 45.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 45.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 45.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 44.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 44.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 44.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 43.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 43.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 43.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 43.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 42.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 42.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 41.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 41.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 40.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 40.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 39.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 39.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 38.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 38.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 38.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 38.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 37.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 37.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 36.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 36.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 36.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 36.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 36.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 35.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 35.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 34.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 33.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 33.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 33.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 33.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 33.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 33.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 31.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 31.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 30.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 30.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 29.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 29.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 29.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 29.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 28.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 28.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 28.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 28.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 27.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 26.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 25.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 25.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 25.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 24.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 23.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 23.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 23.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 23.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 22.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

589.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 589.8
FF:10164-103B2 76 years, female 589.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.1
Pig sample Sample description nTPM
Caudate
nTPM: 367.1
Samples: 4

Max nTPM: 443.1
Min nTPM: 311.7
Sample A Female 311.7
Sample B Female 356.5
Sample C Male 443.1
Sample D Male 357.0

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