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UBA52
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  • TISSUE

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  • UBA52
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:618.4 nTPM
FANTOM5:208.7 Scaled Tags Per Million
Pig:1213.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041344Antibody HPA049132
Glial cells Not detectedHigh
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

618.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 618.4
Samples: 300

Max nTPM: 1362.6
Min nTPM: 298.8
Std nTPM: 156.9
Median nTPM: 601.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1362.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1283.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1235.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1170.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1134.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1130.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1085.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 989.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 988.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 947.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 943.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 924.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 912.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 908.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 887.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 886.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 884.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 867.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 866.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 863.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 859.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 845.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 837.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 835.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 831.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 829.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 826.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 824.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 823.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 822.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 814.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 808.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 804.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 791.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 790.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 785.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 781.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 779.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 774.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 773.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 771.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 769.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 763.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 762.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 753.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 753.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 749.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 744.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 737.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 729.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 724.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 724.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 721.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 721.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 719.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 714.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 713.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 713.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 712.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 711.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 710.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 708.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 706.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 705.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 702.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 699.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 699.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 697.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 697.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 692.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 692.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 691.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 691.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 688.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 688.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 687.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 685.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 684.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 683.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 681.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 681.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 678.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 677.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 677.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 677.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 676.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 672.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 672.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 671.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 671.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 671.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 668.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 667.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 666.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 666.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 664.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 663.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 662.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 657.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 657.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 656.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 655.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 652.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 651.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 650.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 649.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 649.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 646.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 646.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 645.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 643.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 643.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 642.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 642.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 642.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 641.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 640.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 633.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 631.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 631.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 629.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 628.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 628.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 626.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 625.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 625.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 625.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 619.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 617.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 616.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 615.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 615.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 613.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 612.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 612.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 611.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 611.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 611.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 611.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 609.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 609.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 607.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 607.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 605.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 604.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 603.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 603.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 602.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 601.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 601.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 600.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 600.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 599.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 597.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 596.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 596.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 595.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 593.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 591.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 591.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 589.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 588.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 587.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 587.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 579.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 579.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 579.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 577.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 576.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 574.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 574.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 574.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 573.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 573.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 572.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 571.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 570.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 569.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 568.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 567.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 567.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 565.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 563.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 559.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 559.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 556.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 556.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 555.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 554.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 552.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 551.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 551.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 550.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 547.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 547.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 546.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 546.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 546.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 546.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 543.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 542.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 541.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 541.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 540.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 539.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 539.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 538.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 536.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 535.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 535.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 534.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 531.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 531.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 530.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 530.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 529.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 526.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 523.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 522.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 520.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 520.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 518.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 517.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 517.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 516.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 514.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 513.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 512.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 512.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 510.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 509.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 504.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 501.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 500.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 500.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 497.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 496.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 493.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 493.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 493.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 492.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 492.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 491.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 491.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 489.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 486.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 484.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 482.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 481.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 481.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 478.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 478.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 476.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 474.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 474.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 471.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 469.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 465.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 465.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 465.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 464.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 462.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 457.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 452.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 452.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 451.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 451.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 450.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 450.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 448.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 448.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 448.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 446.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 445.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 442.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 439.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 439.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 438.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 437.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 436.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 436.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 435.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 434.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 417.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 414.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 408.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 407.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 407.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 404.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 401.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 398.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 384.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 378.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 376.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 366.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 362.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 358.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 340.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 322.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 298.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

208.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 208.7
FF:10164-103B2 76 years, female 208.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1213.0
Pig sample Sample description nTPM
Caudate
nTPM: 1213.0
Samples: 4

Max nTPM: 1463.9
Min nTPM: 1000.3
Sample A Female 1151.3
Sample B Female 1236.5
Sample C Male 1463.9
Sample D Male 1000.3

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