We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MRPL20
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MRPL20
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:122.7 nTPM
FANTOM5:124.4 Scaled Tags Per Million
Pig:27.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047074
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 122.7
Samples: 300

Max nTPM: 268.7
Min nTPM: 69.3
Std nTPM: 28.6
Median nTPM: 116.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 268.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 234.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 227.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 224.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 223.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 221.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 201.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 192.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 188.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 188.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 188.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 183.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 183.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 180.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 179.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 178.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 177.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 173.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 169.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 167.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 167.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 166.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 165.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 165.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 162.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 161.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 160.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 160.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 158.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 158.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 157.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 157.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 157.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 156.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 155.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 155.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 154.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 152.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 152.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 152.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 152.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 151.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 151.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 150.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 150.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 148.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 147.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 147.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 146.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 145.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 144.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 144.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 144.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 144.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 143.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 142.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 142.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 142.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 141.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 139.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 139.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 139.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 139.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 138.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 138.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 138.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 137.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 137.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 137.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 136.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 135.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 134.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 134.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 133.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 133.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 133.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 132.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 132.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 132.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 132.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 132.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 132.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 131.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 131.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 131.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 130.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 130.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 130.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 129.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 129.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 129.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 129.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 128.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 128.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 128.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 128.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 127.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 127.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 127.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 127.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 127.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 127.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 126.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 125.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 125.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 125.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 125.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 125.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 125.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 125.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 124.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 123.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 123.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 123.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 122.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 122.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 122.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 122.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 122.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 121.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 121.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 121.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 121.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 121.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 121.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 121.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 120.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 120.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 120.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 120.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 120.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 120.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 119.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 119.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 119.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 119.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 119.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 119.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 119.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 118.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 118.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 118.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 118.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 117.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 117.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 117.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 117.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 117.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 116.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 116.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 116.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 116.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 116.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 115.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 115.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 115.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 115.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 115.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 115.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 115.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 115.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 115.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 115.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 114.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 114.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 114.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 114.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 114.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 114.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 114.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 113.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 113.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 113.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 113.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 113.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 112.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 112.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 112.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 112.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 112.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 112.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 112.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 111.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 111.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 111.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 111.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 111.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 110.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 110.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 110.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 110.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 110.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 110.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 110.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 109.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 109.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 109.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 109.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 109.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 109.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 108.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 108.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 108.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 108.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 107.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 107.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 107.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 107.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 106.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 106.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 106.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 106.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 105.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 105.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 105.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 105.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 104.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 104.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 104.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 104.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 104.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 104.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 104.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 104.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 103.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 103.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 103.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 102.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 102.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 101.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 101.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 101.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 101.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 101.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 101.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 100.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 100.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 99.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 99.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 99.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 99.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 99.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 99.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 99.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 99.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 99.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 98.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 98.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 98.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 98.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 98.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 98.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 98.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 98.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 97.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 97.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 97.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 97.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 96.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 96.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 96.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 96.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 96.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 95.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 95.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 95.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 94.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 94.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 94.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 94.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 93.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 93.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 93.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 93.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 92.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 92.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 91.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 91.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 90.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 90.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 88.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 88.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 87.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 86.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 85.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 85.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 85.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 84.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 81.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 80.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 77.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 75.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 74.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 74.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 74.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 69.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

124.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.4
FF:10164-103B2 76 years, female 124.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.3
Pig sample Sample description nTPM
Caudate
nTPM: 27.3
Samples: 4

Max nTPM: 32.6
Min nTPM: 24.1
Sample A Female 28.3
Sample B Female 24.1
Sample C Male 32.6
Sample D Male 24.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo