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  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • NME2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:333.5 nTPM
FANTOM5:133.4 Scaled Tags Per Million
Pig:121.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041113
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

333.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 333.5
Samples: 300

Max nTPM: 802.6
Min nTPM: 176.3
Std nTPM: 80.9
Median nTPM: 319.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 802.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 619.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 616.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 603.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 571.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 555.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 547.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 530.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 528.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 515.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 505.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 495.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 486.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 482.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 480.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 479.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 478.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 476.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 474.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 471.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 469.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 467.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 464.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 459.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 455.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 450.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 449.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 448.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 440.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 439.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 436.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 434.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 433.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 433.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 431.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 421.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 420.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 419.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 416.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 414.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 410.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 409.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 409.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 409.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 406.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 406.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 405.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 403.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 399.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 399.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 398.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 397.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 397.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 396.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 391.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 391.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 390.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 390.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 388.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 387.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 385.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 381.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 380.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 379.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 379.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 379.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 378.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 378.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 376.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 376.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 375.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 374.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 372.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 369.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 367.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 366.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 366.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 366.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 365.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 364.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 364.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 364.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 363.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 363.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 361.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 359.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 359.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 358.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 358.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 357.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 356.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 356.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 355.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 355.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 354.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 353.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 352.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 351.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 351.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 349.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 349.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 348.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 348.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 347.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 347.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 346.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 346.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 345.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 345.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 343.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 343.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 343.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 343.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 340.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 339.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 338.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 338.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 338.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 337.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 337.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 336.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 335.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 334.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 334.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 333.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 333.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 330.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 330.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 328.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 328.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 327.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 327.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 327.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 326.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 326.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 326.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 325.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 325.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 324.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 323.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 322.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 322.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 321.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 321.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 320.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 320.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 320.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 319.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 319.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 319.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 318.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 318.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 317.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 317.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 316.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 316.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 315.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 313.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 312.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 312.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 312.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 312.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 311.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 310.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 309.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 309.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 309.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 309.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 308.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 308.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 307.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 306.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 306.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 306.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 305.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 304.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 304.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 304.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 304.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 304.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 303.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 303.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 302.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 301.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 301.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 301.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 300.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 300.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 298.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 298.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 297.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 297.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 297.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 296.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 295.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 294.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 294.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 294.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 294.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 293.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 292.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 292.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 292.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 292.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 291.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 291.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 290.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 290.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 290.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 289.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 288.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 287.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 287.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 286.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 286.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 286.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 284.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 283.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 283.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 283.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 282.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 282.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 281.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 281.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 279.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 279.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 278.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 278.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 277.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 277.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 277.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 276.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 276.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 275.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 275.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 275.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 274.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 274.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 273.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 273.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 272.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 272.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 271.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 270.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 270.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 270.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 269.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 266.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 266.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 263.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 261.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 260.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 260.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 258.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 258.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 257.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 257.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 256.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 256.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 256.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 255.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 253.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 252.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 252.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 251.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 251.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 251.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 250.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 249.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 248.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 248.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 246.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 246.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 245.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 244.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 244.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 243.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 242.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 237.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 237.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 235.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 233.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 231.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 231.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 231.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 230.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 228.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 228.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 228.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 227.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 226.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 224.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 223.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 222.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 222.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 215.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 207.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 199.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 179.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 176.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

133.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 133.4
FF:10164-103B2 76 years, female 133.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.7
Pig sample Sample description nTPM
Caudate
nTPM: 121.8
Samples: 4

Max nTPM: 137.3
Min nTPM: 98.7
Sample A Female 116.8
Sample B Female 137.3
Sample C Male 134.2
Sample D Male 98.7

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