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YJEFN3
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  • SUMMARY

  • TISSUE

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  • YJEFN3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:170.9 nTPM
FANTOM5:112.2 Scaled Tags Per Million
Pig:15.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA060789
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 170.9
Samples: 300

Max nTPM: 469.6
Min nTPM: 3.2
Std nTPM: 88.9
Median nTPM: 166.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 469.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 414.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 410.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 407.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 398.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 388.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 378.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 376.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 373.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 370.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 363.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 353.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 351.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 349.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 334.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 332.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 326.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 319.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 315.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 311.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 297.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 295.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 294.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 292.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 292.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 288.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 283.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 280.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 279.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 279.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 277.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 276.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 275.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 275.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 274.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 272.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 271.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 271.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 271.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 270.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 268.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 267.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 266.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 265.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 264.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 264.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 260.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 260.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 260.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 259.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 258.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 256.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 255.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 252.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 252.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 252.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 247.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 247.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 246.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 245.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 245.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 244.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 244.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 243.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 242.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 238.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 238.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 237.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 237.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 237.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 236.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 236.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 236.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 234.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 232.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 231.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 230.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 229.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 229.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 228.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 228.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 227.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 225.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 224.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 224.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 223.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 220.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 218.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 217.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 217.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 217.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 217.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 217.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 215.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 213.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 205.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 204.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 204.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 203.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 203.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 202.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 200.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 200.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 199.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 199.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 198.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 198.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 198.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 198.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 197.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 196.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 196.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 195.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 195.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 195.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 195.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 195.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 194.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 193.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 192.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 191.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 191.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 190.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 188.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 187.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 186.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 186.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 185.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 185.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 184.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 183.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 183.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 181.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 181.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 181.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 180.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 179.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 179.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 177.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 176.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 174.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 174.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 174.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 173.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 172.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 172.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 172.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 169.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 167.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 167.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 166.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 165.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 165.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 164.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 164.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 162.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 162.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 161.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 157.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 157.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 153.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 152.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 152.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 150.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 149.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 148.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 148.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 146.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 146.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 145.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 145.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 144.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 144.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 142.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 142.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 142.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 140.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 140.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 138.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 138.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 138.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 136.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 135.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 135.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 135.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 135.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 132.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 131.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 131.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 131.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 128.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 128.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 128.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 128.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 127.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 124.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 124.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 124.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 124.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 122.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 121.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 120.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 118.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 118.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 118.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 117.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 114.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 114.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 112.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 112.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 111.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 111.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 110.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 109.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 108.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 107.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 104.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 103.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 102.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 102.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 101.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 100.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 100.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 98.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 98.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 98.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 95.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 94.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 94.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 94.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 93.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 93.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 90.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 89.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 89.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 88.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 88.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 85.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 85.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 83.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 83.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 83.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 82.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 81.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 79.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 79.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 77.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 76.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 75.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 75.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 74.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 74.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 73.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 73.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 73.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 71.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 70.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 70.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 70.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 69.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 69.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 68.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 64.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 64.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 63.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 63.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 62.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 61.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 60.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 59.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 58.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 57.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 57.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 57.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 56.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 56.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 55.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 51.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 50.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 49.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 48.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 48.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 45.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 41.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 41.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 39.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 39.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 38.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 29.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 28.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 27.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 24.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 23.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 15.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 13.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 7.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 3.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

112.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 112.2
FF:10164-103B2 76 years, female 112.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.3
Pig sample Sample description nTPM
Caudate
nTPM: 15.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 16.7
Sample C Male 19.9
Sample D Male 14.7

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