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EEF1G
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  • SUMMARY

  • TISSUE

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  • EEF1G
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:587.0 nTPM
FANTOM5:25.6 Scaled Tags Per Million
Pig:195.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA040688Antibody HPA055316
Glial cells Not detectedNot detected
Neuronal cells MediumMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

587.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 587.0
Samples: 300

Max nTPM: 1399.7
Min nTPM: 338.7
Std nTPM: 139.1
Median nTPM: 564.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1399.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1183.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1134.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 950.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 926.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 923.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 917.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 912.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 897.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 890.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 890.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 887.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 887.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 882.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 878.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 877.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 873.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 840.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 840.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 838.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 813.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 797.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 787.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 783.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 778.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 774.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 774.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 760.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 758.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 756.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 754.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 754.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 753.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 747.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 745.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 736.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 735.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 731.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 727.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 723.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 711.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 706.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 706.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 704.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 703.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 703.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 698.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 697.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 696.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 696.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 694.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 693.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 692.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 685.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 685.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 685.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 682.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 679.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 678.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 677.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 677.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 676.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 666.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 665.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 665.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 664.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 664.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 662.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 657.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 657.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 656.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 655.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 652.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 645.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 644.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 644.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 644.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 642.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 639.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 638.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 637.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 637.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 637.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 636.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 635.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 635.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 634.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 634.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 633.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 633.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 630.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 626.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 625.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 625.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 624.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 623.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 623.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 622.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 622.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 621.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 620.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 619.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 619.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 615.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 614.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 611.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 610.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 610.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 609.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 607.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 606.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 604.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 603.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 602.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 600.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 600.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 598.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 598.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 597.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 596.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 593.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 591.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 591.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 591.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 590.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 589.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 589.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 588.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 588.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 587.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 586.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 586.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 586.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 585.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 585.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 584.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 584.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 583.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 583.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 582.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 580.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 580.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 578.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 578.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 578.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 572.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 569.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 569.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 568.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 564.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 563.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 562.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 561.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 561.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 559.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 559.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 559.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 558.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 558.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 558.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 557.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 557.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 554.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 554.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 553.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 550.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 549.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 549.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 547.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 546.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 546.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 545.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 545.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 542.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 541.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 540.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 539.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 537.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 537.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 536.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 535.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 534.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 530.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 530.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 529.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 529.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 528.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 528.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 528.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 527.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 527.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 525.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 525.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 525.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 524.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 523.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 518.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 516.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 513.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 513.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 511.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 511.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 511.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 511.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 508.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 506.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 506.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 506.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 506.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 505.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 504.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 504.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 503.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 503.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 501.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 501.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 498.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 496.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 495.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 495.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 495.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 491.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 490.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 489.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 489.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 486.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 484.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 482.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 482.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 480.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 479.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 478.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 478.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 477.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 477.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 476.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 475.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 475.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 475.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 475.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 474.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 474.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 473.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 473.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 472.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 471.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 471.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 471.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 466.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 465.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 463.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 462.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 459.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 459.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 458.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 457.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 456.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 453.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 453.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 451.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 451.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 448.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 448.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 447.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 447.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 447.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 444.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 444.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 444.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 443.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 443.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 441.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 437.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 437.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 435.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 434.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 429.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 429.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 428.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 426.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 426.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 426.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 426.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 422.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 421.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 418.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 417.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 414.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 413.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 410.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 404.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 393.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 392.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 390.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 388.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 373.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 372.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 351.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 345.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 338.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.6
FF:10164-103B2 76 years, female 25.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.7
Pig sample Sample description nTPM
Caudate
nTPM: 195.8
Samples: 4

Max nTPM: 214.9
Min nTPM: 166.0
Sample A Female 192.8
Sample B Female 209.3
Sample C Male 214.9
Sample D Male 166.0

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