Deep Visual Proteomics data

Cell type data

Protein intensity summarized per gene in 27 cell types from 14 tissues. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), analysed sample ("Cell type") and protein intensity ("Intensity").

dvp_cell_type.tsv.zip

Cell types

Download: dvp_cell_types.tsv.zip | 27 lines
Cell type name	Cell type group	Cell type class	Tissue name
neurons	neurons	neuronal cells	brain
astrocytes and neuropil	astrocytes and neuropil	glial cells	brain
microglia and neuropil	microglia and neuropil	glial cells	brain
pancreatic islets	pancreatic islets	endocrine cells	pancreas
ciliated cells	fallopian tube cells	ciliated cells	fallopian tube
alveolar cells type 1	alveolar cell types	specialized epithelial cells	lung
alveolar cells type 2	alveolar cell types	specialized epithelial cells	lung
large ducts	large ducts	specialized epithelial cells	salivary gland
collecting ducts	collecting ducts	specialized epithelial cells	kidney
hepatocytes	hepatocytes	specialized epithelial cells	liver
glomeruli	glomeruli	specialized epithelial cells	kidney
proximal tubules	proximal tubules	specialized epithelial cells	kidney
distal tubules	distal tubules	specialized epithelial cells	kidney
granulosa cells	granulosa cells	specialized epithelial cells	ovary
keratinocytes	keratinocytes	squamous epithelial cells	skin
pancreas epithelial cells	pancreas epithelial cells	glandular epithelial cells	pancreas
secretory cells	fallopian tube cells	glandular epithelial cells	fallopian tube
oocytes	oocytes	germ cells	ovary
cardiomyocytes	cardiomyocytes	muscle cells	heart muscle
skeletal myofibers	skeletal myofibers	muscle cells	skeletal muscle
capillaries	capillaries	endothelial and mural cells	heart muscle
smooth muscle cells	smooth muscle cells	endothelial and mural cells	vasculature
neutrophils	neutrophils	blood and immune cells	bone marrow
macrophages	macrophages	blood and immune cells	lymph node
cd4 t-cells	t-cells	blood and immune cells	lymph node
cd8 t-cells	t-cells	blood and immune cells	lymph node
b-cells	b-cells	blood and immune cells	lymph node

Cell type group data

Protein intensity summarized per gene and transcript expression levels summarized per gene in 24 cell types from 14 tissue. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), analysed sample ("Cell type"), protein intensity ("Intensity"), matched nCPM ("matched_nCPM").

dvp_cell_type_group_data.tsv.zip

Cell type groups

Download: dvp_cell_type_group_cell_type_groups.tsv.zip | 24 lines
Cell type group	Cell type class
alveolar cell types	specialized epithelial cells
astrocytes and neuropil	glial cells
b-cells	blood and immune cells
capillaries	endothelial and mural cells
cardiomyocytes	muscle cells
collecting ducts	specialized epithelial cells
distal tubules	specialized epithelial cells
fallopian tube cells	ciliated cells
glomeruli	specialized epithelial cells
granulosa cells	specialized epithelial cells
hepatocytes	specialized epithelial cells
keratinocytes	squamous epithelial cells
large ducts	specialized epithelial cells
macrophages	blood and immune cells
microglia and neuropil	glial cells
neurons	neuronal cells
neutrophils	blood and immune cells
oocytes	germ cells
pancreas epithelial cells	glandular epithelial cells
pancreatic islets	endocrine cells
proximal tubules	specialized epithelial cells
skeletal myofibers	muscle cells
smooth muscle cells	endothelial and mural cells
t-cells	blood and immune cells

Sample data

Protein intensity per sample in 27 cell types from 14 tissues. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), sample name ("Sample name"), cell type ("Cell type"), replicate ("Replicate") and protein intensity ("Intensity").

dvp_sample_data.tsv.zip