The prostate cell type enriched transcriptomeProstate cell type enriched transcriptome: SummaryProstate cell type enriched transcriptome: Illustrative examples

Tissue cell type methods

The prostate cell type enriched transcriptome

Prostate cell type enriched transcriptome: Summary

Genes with predicted cell type specificity within prostate are detailed in Table 1. Identified genes are subdivided into 3 specificity categories, based on the difference between the enrichment score in the corresponding cell type, compared to the other cell types profiled in the tissue (see Methods Summary page for details):

• Predicted specificity: ´Very high´ - Differential score vs. other profiled cell types within the tissue >0.35
• Predicted specificity: ´High´ - Differential score vs. other profiled cell types within the tissue >0.25
• Predicted specificity: ´Moderate´ - Differential score vs. other profiled cell types within the tissue >0.15

Table 1. Number of genes in each specificity category in the prostate cell types.

Figure 1. Bar plot of the number of enriched genes in the cell types of the prostate, divided by specificity category

Prostate cell type enriched transcriptome: Illustrative examples

Prostate glandular cells

The prostate glandular cells line the luminal surface of the prostate gland, and secrete a variety of proteins that make up the seminal fluid, such as Kallikrein Related Peptidase 3 (KLK3), also known as prostate specific antigen (PSA), which is believed to be important for liquefaction of seminal fluid in the seminal coagulum allowing sperm to swim freely. The serum levels of PSA are often elevated in prostate cancer, and other prostate disorders, making it a widely used biomarker for early detection in patients with prostate cancer. Other genes classified as having high specificity in the prostate glandular cells include Homogentisate 1,2-dioxygenase (HGD), responsible for the breakdown of tyrosine and phenylalanine.

KLK3 - Prostate
KLK3
HGD - Prostate
HGD

Prostate basal glandular cells

Basal glandular cells of the prostate lie beneath the luminal glandular cells, and are important for the structural integrity of the prostate gland. Basal cells are also thought to be the source of the majority of prostate cancers. Genes classified as having high specificity in basal glandular cells include Collagen type XVII alpha 1 chain (COL17A1), involved in anchoring the glandular epidermis to the underlying tissue, as well as Tumor Protein P73 (TP73), which is involved in the cell cycle.

COL17A1 - Prostate
COL17A1
TP73 - Prostate
TP73

Urothelial cells

Seminal fluid from the prostate empties into the urethra, which runs directly through the prostate and is lined by urothelial cells. Urothelial cells are highly impermeable, and protect the underlying tissue from toxic components of the urine. Genes classified as having high specificity in urothelial cells include the structural intermediate filament Keratin 13 KRT13, as well as the antimicrobial peptide GPR15LG.