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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
17.3
nTPM
HPA Brain:
26.0
nTPM
GTEx:
17.3
nTPM
FANTOM5:
66.3
Scaled Tags Per Million
Pig:
45.1
nTPM
Mouse:
50.6
nTPM
Allen mouse:
0.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 24.2
1870
Female, age 42, unknown
28.0
2411
Female, age 72, unknown
27.0
2019
Male, age 18, unknown
26.8
1830
Male, age 51, unknown
25.5
1833
Male, age 53, unknown
24.5
1827
Male, age 72, unknown
23.7
2828
Female, age 72, unknown
23.4
2219
Male, age 76, both hemispheres
23.0
2666
Male, age 74, left hemisphere
21.4
2586
Male, age 75, left hemisphere
18.9
Dorsal raphe nucleus nTPM: 25.2
2750
Male, age 76, both hemispheres
28.0
2298
Female, age 72, unknown
26.4
2016
Female, age 72, unknown
25.0
1828
Male, age 53, unknown
23.9
2047
Male, age 72, unknown
22.8
Inferior colliculus nTPM: 22.1
2097
Female, age 72, unknown
24.2
1890
Male, age 53, unknown
22.0
1848
Female, age 42, unknown
21.8
2849
Male, age 72, unknown
20.3
Median raphe nucleus nTPM: 24.2
2220
Male, age 76, midline
24.2
Periaquaductal grey, anterior nTPM: 22.9
1947
Male, age 18, unknown
25.1
2502
Female, age 75, unknown
21.9
1795
Male, age 51, unknown
21.8
Periaquaductal grey, dorsal nTPM: 23.7
2850
Male, age 76, both hemispheres
25.5
2464
Female, age 72, unknown
23.7
1831
Male, age 72, unknown
22.8
1840
Male, age 53, unknown
22.6
Periaquaductal grey, lateral nTPM: 24.1
2272
Male, age 74, both hemispheres
25.5
2140
Male, age 76, both hemispheres
23.8
2053
Male, age 18, unknown
23.0
Pretectal area nTPM: 25.3
2273
Male, age 74, both hemispheres
28.8
2224
Female, age 72, unknown
26.9
2667
Female, age 75, unknown
26.5
1815
Male, age 53, unknown
26.2
1817
Female, age 42, unknown
26.0
2316
Male, age 76, right hemisphere
25.8
1944
Female, age 72, unknown
24.3
2007
Male, age 72, unknown
24.1
2407
Male, age 75, both hemispheres
24.1
1816
Male, age 51, unknown
23.4
2825
Male, age 18, unknown
22.0
Red nucleus nTPM: 26.0
2785
Male, age 18, unknown
29.7
1904
Male, age 53, unknown
29.3
1865
Male, age 51, unknown
28.5
2823
Male, age 76, right hemisphere
28.4
1954
Female, age 42, unknown
28.2
1821
Female, age 72, unknown
27.0
2769
Male, age 72, unknown
25.6
2725
Female, age 75, unknown
25.0
2227
Male, age 72, unknown
24.6
2503
Female, age 72, unknown
24.4
2588
Male, age 74, left hemisphere
21.6
2584
Male, age 75, left hemisphere
19.4
Substantia nigra nTPM: 24.6
2241
Male, age 72, unknown
28.1
2409
Female, age 72, unknown
26.2
2583
Male, age 75, right hemisphere
26.0
2590
Female, age 75, unknown
25.2
1851
Male, age 51, unknown
25.1
1889
Female, age 72, unknown
24.8
1941
Male, age 53, unknown
24.7
1916
Female, age 42, unknown
22.4
2699
Male, age 18, unknown
22.2
2665
Male, age 74, both hemispheres
21.6
Superior colliculus nTPM: 24.8
1995
Male, age 72, unknown
30.1
1913
Female, age 42, unknown
28.0
1895
Male, age 76, right hemisphere
25.5
2087
Female, age 72, unknown
25.4
2587
Male, age 74, left hemisphere
25.0
2668
Female, age 75, unknown
24.6
2261
Male, age 18, unknown
23.3
1839
Male, age 51, unknown
22.6
1796
Male, age 53, unknown
22.2
2664
Male, age 75, both hemispheres
21.7
Ventral tegmental area nTPM: 25.1
1942
Male, age 51, unknown
25.9
2223
Female, age 72, unknown
25.9
2410
Female, age 72, unknown
25.4
2021
Male, age 53, unknown
25.3
2218
Male, age 76, both hemispheres
24.5
1915
Female, age 42, unknown
23.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 17.3
Samples: 139
Max nTPM: 32.9
Min nTPM: 9.3
Std nTPM: 3.9
Median nTPM: 16.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
32.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
31.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
28.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
28.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
27.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
26.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
23.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
23.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
23.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
22.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
22.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
21.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
21.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
21.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
21.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
21.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
21.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
21.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
21.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
20.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
20.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
20.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
20.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
20.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
20.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
20.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
19.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
19.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
19.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
19.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
19.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
19.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
19.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
19.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
18.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
18.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
18.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
18.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
18.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
18.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
18.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
18.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
18.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
18.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
18.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
18.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
18.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
17.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
17.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
17.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
17.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
17.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
17.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
17.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
17.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
17.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
17.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
17.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
17.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
17.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
16.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
16.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
16.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
16.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
16.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
16.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
16.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
16.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
16.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
16.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
16.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
16.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
16.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
16.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
16.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
16.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
16.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
16.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
15.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
15.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
15.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
15.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
15.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
15.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
15.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
15.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
15.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
15.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
15.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
15.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
15.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
14.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
14.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
14.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
14.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
14.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
14.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
14.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
14.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
14.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
14.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
14.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
14.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
14.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
14.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
13.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
13.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
13.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
13.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
13.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
13.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
13.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
13.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
13.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
12.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
12.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
12.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
12.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
12.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
12.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
12.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
11.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
11.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
10.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
9.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 50.6
Samples: 4
Max nTPM: 53.7
Min nTPM: 46.3
Sample A
Male
46.3
Sample B
Male
49.4
Sample C
Female
53.0
Sample D
Female
53.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.