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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:124.5 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:96.0 nTPM
Mouse:44.7 nTPM
Allen mouse:6.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 90.9
2032 Female, age 42, unknown 101.4
2497 Male, age 66, unknown 97.1
2396 Male, age 61, right hemisphere 74.3
Centromedial thalamic nucleus
nTPM: 124.5
2279 Female, age 85, left hemisphere 130.7
2401 Male, age 76, right hemisphere 118.3
Habenula
nTPM: 76.6
1957 Male, age 80, both hemispheres 98.9
2203 Male, age 61, left hemisphere 90.6
2252 Male, age 62, unknown 63.6
2276 Male, age 66, unknown 53.4
Lateral geniculate body
nTPM: 106.4
2575 Female, age 94, right hemisphere 132.6
2841 Male, age 80, both hemispheres 117.8
1953 Male, age 62, unknown 111.9
2035 Female, age 72, unknown 108.1
2659 Male, age 66, unknown 104.1
2106 Female, age 67, right hemisphere 100.1
2399 Male, age 61, left hemisphere 99.1
2857 Male, age 74, right hemisphere 77.2
Lateral thalamic nuclei
nTPM: 102.7
2765 Female, age 67, both hemispheres 115.4
1903 Male, age 76, left hemisphere 105.0
2573 Female, age 94, left hemisphere 101.2
2577 Male, age 74, both hemispheres 98.0
2661 Female, age 72, unknown 93.9
Medial dorsal thalamic nucleus
nTPM: 86.3
1859 Male, age 76, both hemispheres 114.9
2660 Female, age 72, unknown 104.5
1971 Male, age 61, right hemisphere 95.3
1930 Female, age 42, unknown 89.8
2283 Male, age 80, right hemisphere 88.9
2576 Male, age 74, both hemispheres 88.4
1810 Male, age 48, unknown 84.5
2039 Female, age 72, unknown 82.6
2492 Male, age 75, right hemisphere 78.7
2402 Female, age 67, both hemispheres 77.6
2026 Male, age 62, unknown 75.4
2498 Male, age 66, unknown 71.3
2572 Female, age 94, right hemisphere 69.9
Medial geniculate body
nTPM: 94.8
2571 Male, age 75, right hemisphere 130.2
1811 Female, age 42, unknown 103.1
2217 Female, age 72, unknown 100.1
2650 Female, age 94, left hemisphere 89.9
2207 Male, age 80, right hemisphere 87.3
2657 Male, age 74, right hemisphere 87.2
2049 Male, age 76, both hemispheres 65.9
Nucleus reuniens
nTPM: 107.7
2210 Female, age 85, left hemisphere 149.2
2205 Male, age 80, left hemisphere 98.8
2212 Female, age 67, left hemisphere 75.1
Nucleus rhomboideus
nTPM: 96.2
2280 Female, age 85, left hemisphere 142.4
2206 Male, age 80, both hemispheres 95.4
2213 Female, age 67, left hemisphere 50.8
Posterior thalamic nucleus
nTPM: 86.4
2649 Female, age 94, both hemispheres 113.4
2266 Male, age 76, right hemisphere 95.2
2655 Male, age 74, right hemisphere 72.2
2495 Female, age 67, right hemisphere 64.8
Pulvinar
nTPM: 99.3
2398 Male, age 61, left hemisphere 122.3
2214 Male, age 76, right hemisphere 111.9
1972 Male, age 62, unknown 106.8
1929 Male, age 48, unknown 103.1
1899 Female, age 42, unknown 99.8
2582 Female, age 72, unknown 95.8
1932 Male, age 80, right hemisphere 92.7
2499 Male, age 66, unknown 89.0
2496 Female, age 67, right hemisphere 87.5
2724 Male, age 74, right hemisphere 84.0
Subthalamic nucleus
nTPM: 116.8
2282 Male, age 61, both hemispheres 149.7
2124 Male, age 62, unknown 145.6
2658 Male, age 74, both hemispheres 127.3
2056 Female, age 72, unknown 118.9
2275 Male, age 66, unknown 113.9
2216 Male, age 48, unknown 100.6
2779 Female, age 42, unknown 98.0
2406 Female, age 72, unknown 80.3
Ventral posterolateral thalamic nucleus
nTPM: 99.3
2740 Male, age 76, right hemisphere 119.3
2578 Male, age 74, both hemispheres 102.8
2397 Male, age 61, right hemisphere 98.4
2581 Female, age 72, unknown 93.0
2197 Male, age 80, both hemispheres 92.1
2570 Male, age 75, right hemisphere 89.9
Ventral posteromedial thalamic nucleus
nTPM: 96.3
2202 Male, age 61, left hemisphere 104.6
2127 Male, age 76, right hemisphere 99.3
2653 Male, age 74, both hemispheres 94.5
2281 Male, age 75, right hemisphere 92.2
2758 Male, age 80, both hemispheres 90.9
Ventral thalamic nuclei
nTPM: 104.1
2580 Male, age 66, unknown 119.8
2652 Male, age 74, left hemisphere 117.8
1845 Male, age 48, unknown 114.0
1860 Male, age 76, both hemispheres 107.3
2291 Female, age 72, unknown 101.9
2858 Female, age 72, unknown 101.0
1912 Female, age 42, unknown 95.5
2285 Male, age 62, unknown 94.7
2204 Male, age 80, both hemispheres 84.7
Zona incerta
nTPM: 110.7
2215 Male, age 66, unknown 146.7
2822 Male, age 74, right hemisphere 118.6
2403 Male, age 62, unknown 115.3
2663 Female, age 72, unknown 94.9
2208 Male, age 80, right hemisphere 78.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 83.0
FF:10154-103A1 76 years, female 83.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.0
Pig sample Sample description nTPM
Thalamus
nTPM: 96.0
Samples: 4

Max nTPM: 118.6
Min nTPM: 83.3
Sample A Female 118.6
Sample B Female 83.3
Sample C Male 86.2
Sample D Male 95.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 44.7
Samples: 4

Max nTPM: 50.4
Min nTPM: 38.9
Sample A Male 38.9
Sample B Male 47.3
Sample C Female 42.1
Sample D Female 50.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 6.3
70436746 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 6.3
69028282 Antisense, RP_050316_01_A03, Mouse strain C57BL/6J (56 days, male) 4.1

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