We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
127.0
nTPM
HPA Brain:
73.8
nTPM
GTEx:
127.0
nTPM
FANTOM5:
20.0
Scaled Tags Per Million
Pig:
28.3
nTPM
Mouse:
44.6
nTPM
Allen mouse:
2.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA028185
Antibody HPA062105
Antibody CAB004205
Glial cells
Medium
Not detected
Medium
Neuronal cells
Medium
Low
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 72.2
1898
Male, age 80, left hemisphere
81.1
2529
Female, age 94, left hemisphere
74.9
2148
Female, age 91, left hemisphere
72.2
1855
Male, age 76, left hemisphere
70.7
1911
Female, age 85, right hemisphere
70.0
2621
Female, age 67, right hemisphere
64.6
Dentate gyrus nTPM: 73.3
2530
Female, age 94, left hemisphere
83.6
1927
Female, age 91, both hemispheres
81.0
2528
Male, age 74, both hemispheres
74.6
2010
Male, age 76, both hemispheres
68.6
2246
Female, age 85, both hemispheres
67.3
2531
Female, age 67, both hemispheres
64.9
Entorhinal gyrus nTPM: 67.2
1938
Female, age 85, left hemisphere
73.3
2764
Male, age 80, right hemisphere
71.8
2117
Female, age 91, right hemisphere
71.4
1787
Male, age 76, left hemisphere
69.4
2613
Female, age 94, left hemisphere
60.1
2686
Male, age 75, right hemisphere
57.1
Hippocampus, CA1 nTPM: 73.8
2749
Male, age 80, left hemisphere
96.4
2527
Male, age 74, both hemispheres
71.6
1873
Female, age 85, both hemispheres
67.3
2045
Male, age 76, both hemispheres
67.2
2082
Female, age 91, right hemisphere
66.7
Hippocampus, CA2 nTPM: 70.9
1963
Male, age 80, left hemisphere
91.6
1892
Male, age 76, both hemispheres
71.8
2437
Female, age 94, left hemisphere
70.0
2113
Female, age 91, right hemisphere
64.3
2249
Male, age 74, both hemispheres
64.0
1940
Female, age 85, left hemisphere
63.9
Hippocampus, CA3 nTPM: 71.2
2137
Male, age 80, left hemisphere
83.0
2861
Female, age 67, both hemispheres
78.2
1867
Male, age 76, both hemispheres
71.2
2436
Male, age 74, both hemispheres
67.6
2620
Female, age 94, left hemisphere
65.5
1891
Female, age 85, both hemispheres
61.8
Parahippocampal cortex nTPM: 61.8
2245
Female, age 91, both hemispheres
73.1
1933
Female, age 85, both hemispheres
69.1
2692
Male, age 74, both hemispheres
64.0
1990
Female, age 91, right hemisphere
61.7
2250
Female, age 67, right hemisphere
61.6
2622
Female, age 67, right hemisphere
61.6
2532
Female, age 72, left hemisphere
60.4
1850
Male, age 80, both hemispheres
60.0
2018
Male, age 76, both hemispheres
54.5
2693
Female, age 94, both hemispheres
51.8
Perirhinal gyrus nTPM: 66.1
1847
Female, age 91, left hemisphere
71.8
2521
Female, age 94, right hemisphere
70.1
1794
Male, age 80, right hemisphere
67.3
1841
Female, age 85, right hemisphere
63.0
2848
Male, age 76, right hemisphere
58.4
Subiculum nTPM: 63.6
2729
Female, age 91, right hemisphere
69.4
1901
Male, age 80, both hemispheres
69.0
2042
Male, age 76, both hemispheres
66.1
1977
Female, age 85, both hemispheres
65.8
2619
Male, age 74, both hemispheres
64.7
2438
Female, age 94, left hemisphere
46.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
127.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 127.0
Samples: 197
Max nTPM: 300.0
Min nTPM: 39.2
Std nTPM: 39.4
Median nTPM: 120.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
300.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
251.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
222.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
215.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
212.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
210.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
209.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
205.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
198.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
196.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
196.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
191.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
190.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
190.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
190.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
185.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
184.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
183.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
182.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
181.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
181.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
180.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
179.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
179.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
176.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
174.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
173.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
172.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
172.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
171.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
169.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
168.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
165.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
164.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
164.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
163.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
163.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
162.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
162.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
159.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
158.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
156.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
156.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
155.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
152.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
150.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
149.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
148.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
148.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
147.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
146.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
146.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
146.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
145.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
144.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
144.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
144.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
143.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
142.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
142.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
141.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
139.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
139.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
138.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
138.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
137.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
137.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
136.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
136.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
136.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
135.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
134.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
134.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
134.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
133.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
132.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
131.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
130.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
130.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
130.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
129.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
129.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
129.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
129.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
128.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
128.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
127.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
127.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
126.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
125.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
124.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
123.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
123.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
123.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
122.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
122.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
121.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
121.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
120.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
119.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
119.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
119.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
119.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
119.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
117.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
117.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
116.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
115.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
115.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
115.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
115.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
115.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
115.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
114.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
113.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
112.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
112.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
111.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
111.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
110.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
109.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
108.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
108.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
108.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
107.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
107.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
107.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
106.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
106.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
106.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
106.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
106.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
105.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
105.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
104.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
104.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
104.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
103.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
103.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
102.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
102.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
102.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
101.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
100.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
100.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
100.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
100.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
99.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
99.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
98.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
97.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
97.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
96.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
96.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
96.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
95.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
95.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
95.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
95.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
94.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
94.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
94.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
93.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
93.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
93.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
92.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
92.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
91.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
91.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
90.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
90.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
90.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
89.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
88.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
87.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
87.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
86.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
83.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
82.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
82.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
79.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
78.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
77.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
77.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
76.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
76.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
76.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
73.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
72.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
69.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
68.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
68.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
67.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
57.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
41.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
40.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
39.2
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 40.7
Samples: 4
Max nTPM: 43.8
Min nTPM: 37.9
Sample A
Male
38.5
Sample B
Male
42.4
Sample C
Female
43.8
Sample D
Female
37.9
Hippocampal formation nTPM: 44.6
Samples: 4
Max nTPM: 56.3
Min nTPM: 36.7
Sample A
Male
36.7
Sample B
Male
40.5
Sample C
Female
44.7
Sample D
Female
56.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.