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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
72.0
nTPM
Monaco:
44.5
nTPM
Schmiedel:
9.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.0
HPA sample
nTPM
gdT-cell nTPM: 53.0
Samples: 6
Max nTPM: 74.9
Min nTPM: 36.4
P10809_1007
36.4
P10809_1022
62.1
P10809_1041
49.7
P10809_1060
44.3
P10809_1077
50.6
P10809_1098
74.9
MAIT T-cell nTPM: 54.8
Samples: 6
Max nTPM: 69.2
Min nTPM: 32.2
P10809_1006
32.2
P10809_1024
57.8
P10809_1043
57.0
P10809_1062
60.5
P10809_1083
52.3
P10809_1097
69.2
Memory CD4 T-cell nTPM: 55.6
Samples: 6
Max nTPM: 67.2
Min nTPM: 44.5
P10809_1014
44.5
P10809_1026
45.9
P10809_1045
55.4
P10809_1064
63.0
P10809_1086
57.6
P10809_1113
67.2
Memory CD8 T-cell nTPM: 51.9
Samples: 5
Max nTPM: 66.7
Min nTPM: 39.9
P10809_1012
40.2
P10809_1027
39.9
P10809_1046
59.5
P10809_1065
53.4
P10809_1111
66.7
Naive CD4 T-cell nTPM: 40.0
Samples: 6
Max nTPM: 54.7
Min nTPM: 18.1
P10809_1015
18.1
P10809_1030
42.4
P10809_1049
54.7
P10809_1068
44.7
P10809_1085
36.0
P10809_1112
43.8
Naive CD8 T-cell nTPM: 41.0
Samples: 6
Max nTPM: 51.3
Min nTPM: 23.8
P10809_1016
23.8
P10809_1031
43.4
P10809_1050
40.1
P10809_1069
51.3
P10809_1087
49.8
P10809_1110
37.8
T-reg nTPM: 71.9
Samples: 6
Max nTPM: 94.6
Min nTPM: 49.9
P10809_1018
49.9
P10809_1037
62.5
P10809_1056
91.9
P10809_1075
53.9
P10809_1094
78.8
P10809_1106
94.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 33.6
Samples: 4
Max nTPM: 47.8
Min nTPM: 23.1
RHH5202_R3573
33.5
RHH5230_R3602
29.8
RHH5259_R3631
23.1
RHH5288_R3660
47.8
Effector memory CD8 T-cell nTPM: 34.9
Samples: 4
Max nTPM: 41.8
Min nTPM: 27.0
RHH5203_R3574
34.8
RHH5231_R3603
41.8
RHH5260_R3632
35.8
RHH5289_R3661
27.0
MAIT T-cell nTPM: 40.9
Samples: 4
Max nTPM: 66.5
Min nTPM: 20.2
RHH5233_R3605
31.5
RHH5205_R3576
45.3
RHH5262_R3634
20.2
RHH5297_R3663
66.5
Memory CD4 T-cell TFH nTPM: 44.5
Samples: 4
Max nTPM: 66.5
Min nTPM: 32.5
RHH5300_R3666
42.5
RHH5236_R3608
66.5
RHH5265_R3637
32.5
RHH5208_R3579
36.3
Memory CD4 T-cell Th1 nTPM: 36.3
Samples: 4
Max nTPM: 56.2
Min nTPM: 28.1
RHH5210_R3581
28.3
RHH5302_R3668
56.2
RHH5238_R3610
32.5
RHH5267_R3639
28.1
Memory CD4 T-cell Th1/Th17 nTPM: 41.9
Samples: 4
Max nTPM: 64.4
Min nTPM: 21.2
RHH5303_R3669
57.0
RHH5211_R3582
64.4
RHH5239_R3611
21.2
RHH5268_R3640
25.0
Memory CD4 T-cell Th17 nTPM: 33.3
Samples: 4
Max nTPM: 47.2
Min nTPM: 19.2
RHH5304_R3670
36.6
RHH5212_R3583
47.2
RHH5240_R3612
19.2
RHH5269_R3641
30.0
Memory CD4 T-cell Th2 nTPM: 38.6
Samples: 4
Max nTPM: 47.6
Min nTPM: 26.3
RHH5305_R3671
45.3
RHH5213_R3584
47.6
RHH5241_R3613
35.3
RHH5270_R3642
26.3
Naive CD4 T-cell nTPM: 34.5
Samples: 4
Max nTPM: 37.5
Min nTPM: 27.2
RHH5306_R3672
37.5
RHH5214_R3585
35.9
RHH5242_R3614
37.4
RHH5271_R3643
27.2
Naive CD8 T-cell nTPM: 23.4
Samples: 4
Max nTPM: 27.2
Min nTPM: 20.5
RHH5201_R3572
27.2
RHH5229_R3601
20.5
RHH5258_R3630
25.3
RHH5287_R3659
20.6
Non-Vd2 gdTCR nTPM: 41.2
Samples: 4
Max nTPM: 69.9
Min nTPM: 22.9
RHH5235_R3607
22.9
RHH5264_R3636
35.9
RHH5207_R3578
36.2
RHH5299_R3665
69.9
T-reg nTPM: 32.1
Samples: 4
Max nTPM: 45.9
Min nTPM: 19.4
RHH5301_R3667
45.9
RHH5237_R3609
30.9
RHH5266_R3638
19.4
RHH5209_R3580
32.0
Terminal effector memory CD4 T-cell nTPM: 28.4
Samples: 2
Max nTPM: 30.0
Min nTPM: 26.8
RHH5243_R3615
26.8
RHH5272_R3644
30.0
Terminal effector memory CD8 T-cell nTPM: 38.4
Samples: 4
Max nTPM: 58.4
Min nTPM: 23.0
RHH5232_R3604
40.7
RHH5204_R3575
58.4
RHH5261_R3633
23.0
RHH5296_R3662
31.6
Vd2 gdTCR nTPM: 41.4
Samples: 4
Max nTPM: 48.0
Min nTPM: 35.4
RHH5234_R3606
35.4
RHH5206_R3577
48.0
RHH5263_R3635
35.7
RHH5298_R3664
46.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
