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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:131.7 nTPM
HPA Brain:130.7 nTPM
GTEx:131.7 nTPM
FANTOM5:170.8 Scaled Tags Per Million
Pig:35.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.7
Sample id Sample description nTPM
Amygdala
nTPM: 130.7
1987 Female, age 91, left hemisphere 191.3
2695 Female, age 67, right hemisphere 139.5
2514 Male, age 75, right hemisphere 115.4
2517 Female, age 94, left hemisphere 107.1
2814 Male, age 76, right hemisphere 100.3
Basal amygdala
nTPM: 88.1
2609 Male, age 75, right hemisphere 127.6
2110 Male, age 80, left hemisphere 93.9
2243 Female, age 91, right hemisphere 93.5
1955 Male, age 76, both hemispheres 93.1
2685 Female, age 94, left hemisphere 63.5
2827 Female, age 67, right hemisphere 56.8
Central amygdala
nTPM: 110.5
2515 Male, age 75, right hemisphere 168.2
2826 Female, age 94, left hemisphere 100.3
2701 Female, age 91, right hemisphere 97.1
1905 Male, age 76, both hemispheres 94.3
2239 Male, age 80, left hemisphere 92.4
Corticomedial amygdala
nTPM: 96.1
2242 Female, age 91, right hemisphere 135.8
2428 Male, age 75, right hemisphere 121.6
2829 Male, age 80, left hemisphere 105.0
2240 Male, age 76, both hemispheres 89.8
2429 Female, age 94, left hemisphere 66.5
2535 Female, age 67, right hemisphere 58.0
Lateral amygdala
nTPM: 89.5
2256 Male, age 80, left hemisphere 118.2
2516 Male, age 75, right hemisphere 97.3
1883 Male, age 76, both hemispheres 90.8
2255 Female, age 91, right hemisphere 88.4
2830 Female, age 67, right hemisphere 80.4
2534 Female, age 94, left hemisphere 62.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 131.7
Samples: 152

Max nTPM: 697.1
Min nTPM: 16.0
Std nTPM: 77.7
Median nTPM: 117.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 697.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 393.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 317.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 303.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 274.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 255.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 252.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 252.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 235.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 233.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 219.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 212.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 210.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 210.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 208.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 205.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 204.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 203.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 202.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 202.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 202.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 200.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 199.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 199.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 198.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 197.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 192.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 188.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 187.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 186.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 186.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 175.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 171.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 170.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 169.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 168.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 166.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 163.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 162.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 161.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 160.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 158.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 158.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 158.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 154.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 153.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 151.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 150.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 148.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 147.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 146.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 146.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 144.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 142.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 141.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 139.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 138.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 137.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 137.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 134.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 134.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 134.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 132.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 131.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 130.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 126.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 125.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 122.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 122.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 121.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 121.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 121.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 117.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 117.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 116.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 115.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 113.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 112.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 111.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 111.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 110.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 110.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 110.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 110.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 109.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 108.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 104.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 103.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 102.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 99.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 98.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 98.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 97.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 95.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 95.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 94.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 94.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 94.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 93.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 93.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 92.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 92.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 91.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 90.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 90.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 85.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 83.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 77.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 77.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 77.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 76.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 75.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 72.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 71.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 71.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 70.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 68.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 67.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 65.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 61.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 61.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 59.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 59.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 59.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 59.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 58.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 55.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 55.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 52.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 52.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 52.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 50.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 50.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 49.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 48.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 48.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 46.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 45.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 40.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 40.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 39.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 32.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 16.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

170.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 170.8
FF:10151-102I7 76 years, female 170.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.2
Pig sample Sample description nTPM
Amygdala
nTPM: 35.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 27.8
Sample A Female 39.5
Sample B Female 27.8
Sample C Male 37.5
Sample D Male 36.0

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