We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1091.5
nTPM
Monaco:
731.6
nTPM
Schmiedel:
289.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1091.5
HPA sample
nTPM
gdT-cell nTPM: 1091.5
Samples: 6
Max nTPM: 1313.3
Min nTPM: 833.1
P10809_1007
935.8
P10809_1022
1313.3
P10809_1041
1231.3
P10809_1060
833.1
P10809_1077
1254.5
P10809_1098
980.7
MAIT T-cell nTPM: 621.7
Samples: 6
Max nTPM: 778.2
Min nTPM: 459.5
P10809_1006
459.5
P10809_1024
665.1
P10809_1043
596.0
P10809_1062
516.4
P10809_1083
715.0
P10809_1097
778.2
Memory CD4 T-cell nTPM: 732.5
Samples: 6
Max nTPM: 883.5
Min nTPM: 513.5
P10809_1014
513.5
P10809_1026
786.7
P10809_1045
757.1
P10809_1064
828.3
P10809_1086
883.5
P10809_1113
625.7
Memory CD8 T-cell nTPM: 961.1
Samples: 5
Max nTPM: 1093.5
Min nTPM: 757.5
P10809_1012
757.5
P10809_1027
1063.4
P10809_1046
1093.5
P10809_1065
962.6
P10809_1111
928.3
Naive CD4 T-cell nTPM: 268.2
Samples: 6
Max nTPM: 532.3
Min nTPM: 187.8
P10809_1015
188.0
P10809_1030
231.8
P10809_1049
266.2
P10809_1068
187.8
P10809_1085
532.3
P10809_1112
203.3
Naive CD8 T-cell nTPM: 551.4
Samples: 6
Max nTPM: 1023.1
Min nTPM: 212.3
P10809_1016
212.3
P10809_1031
515.5
P10809_1050
544.8
P10809_1069
672.7
P10809_1087
1023.1
P10809_1110
339.7
T-reg nTPM: 836.0
Samples: 6
Max nTPM: 967.0
Min nTPM: 688.5
P10809_1018
688.5
P10809_1037
847.7
P10809_1056
967.0
P10809_1075
846.4
P10809_1094
750.0
P10809_1106
916.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
731.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 373.9
Samples: 4
Max nTPM: 546.4
Min nTPM: 274.0
RHH5202_R3573
383.9
RHH5230_R3602
291.3
RHH5259_R3631
274.0
RHH5288_R3660
546.4
Effector memory CD8 T-cell nTPM: 579.2
Samples: 4
Max nTPM: 742.2
Min nTPM: 437.0
RHH5203_R3574
561.7
RHH5231_R3603
742.2
RHH5260_R3632
437.0
RHH5289_R3661
576.0
MAIT T-cell nTPM: 330.6
Samples: 4
Max nTPM: 451.4
Min nTPM: 221.3
RHH5233_R3605
451.4
RHH5205_R3576
221.3
RHH5262_R3634
252.5
RHH5297_R3663
397.0
Memory CD4 T-cell TFH nTPM: 345.7
Samples: 4
Max nTPM: 492.0
Min nTPM: 246.3
RHH5300_R3666
294.1
RHH5236_R3608
492.0
RHH5265_R3637
246.3
RHH5208_R3579
350.3
Memory CD4 T-cell Th1 nTPM: 363.0
Samples: 4
Max nTPM: 500.8
Min nTPM: 271.6
RHH5210_R3581
277.6
RHH5302_R3668
500.8
RHH5238_R3610
402.0
RHH5267_R3639
271.6
Memory CD4 T-cell Th1/Th17 nTPM: 386.4
Samples: 4
Max nTPM: 577.2
Min nTPM: 210.2
RHH5303_R3669
577.2
RHH5211_R3582
489.4
RHH5239_R3611
210.2
RHH5268_R3640
268.6
Memory CD4 T-cell Th17 nTPM: 290.8
Samples: 4
Max nTPM: 486.1
Min nTPM: 164.4
RHH5304_R3670
262.1
RHH5212_R3583
486.1
RHH5240_R3612
250.5
RHH5269_R3641
164.4
Memory CD4 T-cell Th2 nTPM: 398.7
Samples: 4
Max nTPM: 578.6
Min nTPM: 259.2
RHH5305_R3671
384.7
RHH5213_R3584
372.2
RHH5241_R3613
578.6
RHH5270_R3642
259.2
Naive CD4 T-cell nTPM: 157.5
Samples: 4
Max nTPM: 208.7
Min nTPM: 78.6
RHH5306_R3672
167.4
RHH5214_R3585
175.2
RHH5242_R3614
208.7
RHH5271_R3643
78.6
Naive CD8 T-cell nTPM: 91.8
Samples: 4
Max nTPM: 111.8
Min nTPM: 74.0
RHH5201_R3572
111.8
RHH5229_R3601
78.0
RHH5258_R3630
74.0
RHH5287_R3659
103.4
Non-Vd2 gdTCR nTPM: 614.8
Samples: 4
Max nTPM: 710.6
Min nTPM: 431.0
RHH5235_R3607
431.0
RHH5264_R3636
689.1
RHH5207_R3578
628.5
RHH5299_R3665
710.6
T-reg nTPM: 307.0
Samples: 4
Max nTPM: 431.6
Min nTPM: 170.8
RHH5301_R3667
377.3
RHH5237_R3609
431.6
RHH5266_R3638
170.8
RHH5209_R3580
248.1
Terminal effector memory CD4 T-cell nTPM: 577.1
Samples: 2
Max nTPM: 703.5
Min nTPM: 450.7
RHH5243_R3615
450.7
RHH5272_R3644
703.5
Terminal effector memory CD8 T-cell nTPM: 731.6
Samples: 4
Max nTPM: 937.6
Min nTPM: 508.8
RHH5232_R3604
737.3
RHH5204_R3575
937.6
RHH5261_R3633
508.8
RHH5296_R3662
742.6
Vd2 gdTCR nTPM: 541.7
Samples: 4
Max nTPM: 797.0
Min nTPM: 288.4
RHH5234_R3606
542.6
RHH5206_R3577
797.0
RHH5263_R3635
288.4
RHH5298_R3664
538.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
