MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.8 nTPM
HPA Brain:101.0 nTPM
GTEx:36.8 nTPM
FANTOM5:75.4 Scaled Tags Per Million
Pig:63.5 nTPM
Mouse:58.3 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 101.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.6
2666 Male, age 74, left hemisphere 118.6
2828 Female, age 72, unknown 108.2
2586 Male, age 75, left hemisphere 107.9
1827 Male, age 72, unknown 99.2
2219 Male, age 76, both hemispheres 89.5
1870 Female, age 42, unknown 76.2
1833 Male, age 53, unknown 75.2
2411 Female, age 72, unknown 74.0
2019 Male, age 18, unknown 71.6
1830 Male, age 51, unknown 65.5
Dorsal raphe nucleus
nTPM: 86.7
2047 Male, age 72, unknown 98.5
2298 Female, age 72, unknown 90.9
1828 Male, age 53, unknown 83.1
2016 Female, age 72, unknown 81.6
2750 Male, age 76, both hemispheres 79.2
Inferior colliculus
nTPM: 75.9
2849 Male, age 72, unknown 79.1
2097 Female, age 72, unknown 76.0
1848 Female, age 42, unknown 74.6
1890 Male, age 53, unknown 74.1
Median raphe nucleus
nTPM: 85.7
2220 Male, age 76, midline 85.7
Periaquaductal grey, anterior
nTPM: 96.9
1795 Male, age 51, unknown 107.2
1947 Male, age 18, unknown 97.2
2502 Female, age 75, unknown 86.3
Periaquaductal grey, dorsal
nTPM: 85.2
1840 Male, age 53, unknown 101.6
1831 Male, age 72, unknown 85.9
2464 Female, age 72, unknown 80.4
2850 Male, age 76, both hemispheres 73.1
Periaquaductal grey, lateral
nTPM: 75.5
2053 Male, age 18, unknown 88.7
2140 Male, age 76, both hemispheres 74.7
2272 Male, age 74, both hemispheres 63.2
Pretectal area
nTPM: 91.1
1816 Male, age 51, unknown 128.0
1944 Female, age 72, unknown 113.6
1815 Male, age 53, unknown 103.9
1817 Female, age 42, unknown 102.2
2007 Male, age 72, unknown 88.7
2825 Male, age 18, unknown 88.6
2407 Male, age 75, both hemispheres 87.5
2667 Female, age 75, unknown 82.1
2224 Female, age 72, unknown 77.5
2316 Male, age 76, right hemisphere 68.2
2273 Male, age 74, both hemispheres 61.7
Red nucleus
nTPM: 69.7
2725 Female, age 75, unknown 89.8
2584 Male, age 75, left hemisphere 88.7
2588 Male, age 74, left hemisphere 75.1
1821 Female, age 72, unknown 70.7
1954 Female, age 42, unknown 67.3
2823 Male, age 76, right hemisphere 67.3
2785 Male, age 18, unknown 67.0
2503 Female, age 72, unknown 66.8
2769 Male, age 72, unknown 62.7
2227 Male, age 72, unknown 61.8
1904 Male, age 53, unknown 61.4
1865 Male, age 51, unknown 57.8
Substantia nigra
nTPM: 101.0
1916 Female, age 42, unknown 129.4
2665 Male, age 74, both hemispheres 116.8
1851 Male, age 51, unknown 104.1
2241 Male, age 72, unknown 104.1
2583 Male, age 75, right hemisphere 102.7
2590 Female, age 75, unknown 94.0
2699 Male, age 18, unknown 93.8
1889 Female, age 72, unknown 89.1
2409 Female, age 72, unknown 88.0
1941 Male, age 53, unknown 87.6
Superior colliculus
nTPM: 89.2
2664 Male, age 75, both hemispheres 115.6
2087 Female, age 72, unknown 104.8
1796 Male, age 53, unknown 100.3
2261 Male, age 18, unknown 99.2
2668 Female, age 75, unknown 87.8
2587 Male, age 74, left hemisphere 81.4
1839 Male, age 51, unknown 80.5
1913 Female, age 42, unknown 77.2
1995 Male, age 72, unknown 76.2
1895 Male, age 76, right hemisphere 69.0
Ventral tegmental area
nTPM: 88.1
2218 Male, age 76, both hemispheres 96.8
2410 Female, age 72, unknown 95.4
1915 Female, age 42, unknown 92.4
1942 Male, age 51, unknown 91.3
2021 Male, age 53, unknown 86.9
2223 Female, age 72, unknown 65.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.8
Samples: 139

Max nTPM: 56.1
Min nTPM: 16.1
Std nTPM: 9.0
Median nTPM: 37.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 56.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 55.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 55.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 54.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 54.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 53.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 52.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 52.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 51.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.4
FF:10158-103A5 76 years, female 75.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.7
Samples: 4

Max nTPM: 69.3
Min nTPM: 48.9
Sample A Female 69.3
Sample B Female 56.3
Sample C Male 68.3
Sample D Male 48.9
Midbrain
nTPM: 63.6
Samples: 4

Max nTPM: 74.2
Min nTPM: 53.9
Sample A Female 59.4
Sample B Female 53.9
Sample C Male 74.2
Sample D Male 66.7
Periaqueductal gray
nTPM: 55.2
Samples: 3

Max nTPM: 65.6
Min nTPM: 47.6
Sample B Female 52.5
Sample C Male 65.6
Sample D Male 47.6
Superior colliculi
nTPM: 59.7
Samples: 4

Max nTPM: 64.5
Min nTPM: 54.4
Sample A Female 64.5
Sample B Female 59.7
Sample C Male 54.4
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.3
Samples: 4

Max nTPM: 59.8
Min nTPM: 55.1
Sample A Male 55.1
Sample B Male 59.8
Sample C Female 59.4
Sample D Female 58.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
512991 Antisense, RP_040809_02_F09, Mouse strain C57BL/6J (56 days, male) 10.8
81599648 Antisense, RP_071212_04_F09, Mouse strain C57BL/6J (56 days, male) 4.1

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