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  • LASP1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: High
Goblet cells: Medium
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:158.9 nTPM
HPA:158.9 nTPM
GTEx:99.1 nTPM
FANTOM5:917.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA012072Antibody CAB022049
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli High-
Glandular cells -Medium
Goblet cells Medium-
Paneth cells Not detected-




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.9
overview
Male, age 65
Small intestine sample 232
nTPM: 165.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 177.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 143.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 149.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 99.1
Samples: 207

Max nTPM: 315.0
Min nTPM: 19.9
Std nTPM: 62.4
Median nTPM: 75.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 315.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 275.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 261.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 260.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 240.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 234.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 233.6
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 228.5
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 222.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 222.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 221.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 219.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 210.5
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 210.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 207.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 206.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 204.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 204.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 202.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 201.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 198.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 197.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 195.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 195.1
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 193.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 190.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 187.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 186.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 183.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 182.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 182.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 180.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 180.2
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 179.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 174.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 173.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 170.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 167.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 166.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 164.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 163.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 160.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 154.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 151.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 149.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 146.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 145.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 144.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 141.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 140.5
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 137.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 133.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 131.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 131.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 129.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 128.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 127.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 125.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 125.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 125.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 124.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 122.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 120.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 118.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 118.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 118.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 118.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 117.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 115.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 115.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 111.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 111.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 110.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 108.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 108.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 107.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 104.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 103.8
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 98.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 98.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 97.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 96.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 95.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 95.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 93.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 93.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 93.4
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 92.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 91.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 91.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 88.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 88.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 87.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 84.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 83.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 82.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 81.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 80.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 79.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 77.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 77.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 76.0
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 75.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 75.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 75.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 73.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 73.7
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 71.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 71.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 69.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 68.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 68.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 68.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 67.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 64.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 64.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 64.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 63.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 63.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 63.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 62.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 62.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 62.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 62.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 61.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 61.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 60.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 60.6
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 60.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 59.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 59.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 59.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 58.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 58.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 58.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 57.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 57.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 57.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 57.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 57.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 57.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 56.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 56.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 56.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 55.7
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 55.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 55.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 54.9
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 54.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 54.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 54.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 54.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 54.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 53.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 53.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 52.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 52.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 52.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 51.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 51.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 51.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 51.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 51.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 51.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 50.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 48.8
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 47.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 46.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 46.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 46.2
GTEX-1192X-2526-SM-59868 50-59 years, male 45.9
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 44.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 44.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 44.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 43.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 43.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 43.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 43.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 43.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 40.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 38.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 38.0
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 38.0
GTEX-178AV-1226-SM-GOR11 40-49 years, male 37.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 37.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 36.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 35.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 35.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 34.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 33.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 33.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 33.3
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 33.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 32.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 30.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 30.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 29.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 28.6
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 28.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 27.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 26.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 26.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 25.8
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 25.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 25.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 24.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 19.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

917.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 917.5
FF:10024-101D6 15,40,85 years, mixed 917.5

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