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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:16.6 nTPM
HPA Brain:20.3 nTPM
GTEx:16.6 nTPM
FANTOM5:17.1 Scaled Tags Per Million
Pig:10.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 17.1
1981 Female, age 72, midline 19.4
2194 Female, age 79, both hemispheres 17.4
2816 Male, age 47, midline 17.4
2565 Male, age 75, midline 16.8
2048 Male, age 55, midline 14.3
Cervical spinal cord, dorsal horn
nTPM: 20.3
1877 Male, age 55, unknown 22.8
2297 Male, age 75, both hemispheres 22.3
2069 Male, age 47, both hemispheres 21.3
2296 Male, age 66, both hemispheres 19.8
2173 Female, age 72, unknown 18.4
2721 Male, age 90, both hemispheres 17.0
Cervical spinal cord, ventral horn
nTPM: 19.2
2480 Male, age 75, both hemispheres 23.5
2809 Male, age 90, both hemispheres 21.6
2098 Female, age 72, unknown 19.1
2295 Male, age 66, both hemispheres 18.4
2068 Male, age 55, unknown 17.5
2820 Female, age 79, both hemispheres 14.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 16.6
Samples: 159

Max nTPM: 23.4
Min nTPM: 9.5
Std nTPM: 2.7
Median nTPM: 16.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 23.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 23.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 23.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 23.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 22.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 22.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 22.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 21.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 21.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 21.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 21.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 21.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 21.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 20.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 20.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 20.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 20.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 20.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 20.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 20.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 19.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 19.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 19.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 19.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 19.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 19.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 19.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 19.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 19.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 19.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 19.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 18.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 18.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 18.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 18.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 18.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 18.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 18.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 18.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 18.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 18.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 18.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 18.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 18.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 18.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 18.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 17.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 17.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 17.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 17.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 17.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 17.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 17.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 17.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 17.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 17.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 17.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 17.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 17.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 17.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 17.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 17.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 17.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 16.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 16.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 16.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 16.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 16.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 16.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 16.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 16.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 16.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 16.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 16.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 16.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 16.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 16.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 16.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 16.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 16.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 16.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 16.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 16.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 16.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 16.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 16.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 16.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 16.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 16.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 15.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 15.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 15.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 15.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 15.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 15.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 15.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 15.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 15.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 15.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 15.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 15.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 15.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 15.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 15.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 15.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 15.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 15.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 15.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 15.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 15.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 15.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 15.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 15.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 15.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 15.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 14.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 14.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 14.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 14.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 14.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 14.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 14.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 14.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 14.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 14.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 14.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 14.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 14.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 14.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 14.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 14.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 14.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 14.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 14.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 13.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 13.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 13.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 13.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 13.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 13.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 13.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 13.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 13.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 13.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 12.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 12.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 12.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 12.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 12.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 12.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 12.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 12.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 12.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 12.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 11.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 11.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 11.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 11.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 9.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 17.1
FF:10159-103A6 76 years, female 19.9
FF:10181-103D1 60 years, female 14.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 9.5
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.8
Sample A Female 10.3
Sample B Female 8.8
Sample C Male 9.5
Sample D Male 9.2
Ventral spinal cord
nTPM: 10.5
Samples: 4

Max nTPM: 10.9
Min nTPM: 10.2
Sample A Female 10.9
Sample B Female 10.4
Sample C Male 10.3
Sample D Male 10.2

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