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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
21.3
nTPM
GTEx:
23.6
nTPM
FANTOM5:
32.1
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA008770
Glial cells
Medium
Neuronal cells
Not detected
HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 21.3
1898
Male, age 80, left hemisphere
25.5
2529
Female, age 94, left hemisphere
24.4
2148
Female, age 91, left hemisphere
21.5
1855
Male, age 76, left hemisphere
20.4
1911
Female, age 85, right hemisphere
20.4
2621
Female, age 67, right hemisphere
15.5
HIPPOCAMPUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 23.6
Samples: 197
Max nTPM: 88.2
Min nTPM: 5.6
Std nTPM: 12.1
Median nTPM: 21.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
88.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
71.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
62.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
59.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
58.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
56.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
51.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
50.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
49.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
48.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
43.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
42.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
41.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
40.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
40.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
40.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
39.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
39.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
36.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
34.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
34.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
34.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
34.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
34.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
33.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
33.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
33.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
33.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
33.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
33.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
33.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
33.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
33.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
32.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
32.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
32.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
32.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
32.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
32.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
32.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
31.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
30.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
30.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
30.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
30.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
30.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
30.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
30.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
30.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
29.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
29.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
29.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
29.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
28.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
28.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
28.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
28.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
27.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
27.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
27.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
27.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
26.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
26.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
26.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
26.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
26.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
26.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
26.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
26.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
26.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
26.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
26.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
25.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
25.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
25.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
25.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
25.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
25.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
24.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
24.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
24.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
24.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
23.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
23.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
23.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
23.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
23.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
23.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
23.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
23.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
23.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
22.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
22.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
22.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
22.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
22.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
22.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
21.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
21.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
21.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
21.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
21.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
21.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
21.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
21.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
21.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
21.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
20.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
20.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
20.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
20.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
20.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
20.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
19.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
19.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
19.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
19.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
19.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
19.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
19.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
19.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
19.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
18.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
18.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
18.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
18.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
18.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
17.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
17.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
17.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
16.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
16.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
16.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
16.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
16.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
16.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
15.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
15.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
15.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
15.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
15.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
15.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
15.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
15.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
15.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
15.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
14.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
14.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
14.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
14.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
14.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
14.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
14.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
13.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
13.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
13.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
13.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
12.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
12.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
12.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
12.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
12.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
12.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
12.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
12.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
12.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
12.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
11.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
11.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
11.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
11.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
11.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
11.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
11.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
10.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
10.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
10.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
10.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
10.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
10.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
10.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
9.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
9.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
9.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
9.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
9.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
8.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
8.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
8.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
8.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
8.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
7.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
7.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
5.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
5.6
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HIPPOCAMPUS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.