MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:10.9 nTPM
GTEx:6.8 nTPM
FANTOM5:29.6 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:42.9 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.2
2019 Male, age 18, unknown 13.0
2219 Male, age 76, both hemispheres 9.9
2411 Female, age 72, unknown 9.4
1827 Male, age 72, unknown 8.9
1870 Female, age 42, unknown 8.8
2666 Male, age 74, left hemisphere 8.7
2586 Male, age 75, left hemisphere 8.6
1833 Male, age 53, unknown 8.4
2828 Female, age 72, unknown 8.1
1830 Male, age 51, unknown 7.9
Dorsal raphe nucleus
nTPM: 9.5
1828 Male, age 53, unknown 10.5
2047 Male, age 72, unknown 10.5
2750 Male, age 76, both hemispheres 9.6
2016 Female, age 72, unknown 8.5
2298 Female, age 72, unknown 8.3
Inferior colliculus
nTPM: 9.2
2097 Female, age 72, unknown 10.4
1848 Female, age 42, unknown 9.1
2849 Male, age 72, unknown 8.9
1890 Male, age 53, unknown 8.3
Median raphe nucleus
nTPM: 10.9
2220 Male, age 76, midline 10.9
Periaquaductal grey, anterior
nTPM: 9.0
2502 Female, age 75, unknown 9.8
1947 Male, age 18, unknown 9.6
1795 Male, age 51, unknown 7.7
Periaquaductal grey, dorsal
nTPM: 8.9
1840 Male, age 53, unknown 9.6
2850 Male, age 76, both hemispheres 9.0
2464 Female, age 72, unknown 8.8
1831 Male, age 72, unknown 8.4
Periaquaductal grey, lateral
nTPM: 8.1
2272 Male, age 74, both hemispheres 9.0
2140 Male, age 76, both hemispheres 7.9
2053 Male, age 18, unknown 7.4
Pretectal area
nTPM: 10.0
1816 Male, age 51, unknown 12.9
2007 Male, age 72, unknown 11.8
1944 Female, age 72, unknown 11.6
1817 Female, age 42, unknown 10.9
2407 Male, age 75, both hemispheres 10.7
1815 Male, age 53, unknown 9.7
2224 Female, age 72, unknown 9.7
2667 Female, age 75, unknown 9.3
2316 Male, age 76, right hemisphere 8.2
2273 Male, age 74, both hemispheres 8.0
2825 Male, age 18, unknown 7.1
Red nucleus
nTPM: 8.4
1821 Female, age 72, unknown 9.4
2588 Male, age 74, left hemisphere 9.4
2725 Female, age 75, unknown 9.4
2823 Male, age 76, right hemisphere 9.2
2785 Male, age 18, unknown 8.9
1954 Female, age 42, unknown 8.5
2503 Female, age 72, unknown 8.0
1865 Male, age 51, unknown 7.9
1904 Male, age 53, unknown 7.7
2584 Male, age 75, left hemisphere 7.5
2769 Male, age 72, unknown 7.4
2227 Male, age 72, unknown 7.2
Substantia nigra
nTPM: 10.7
2241 Male, age 72, unknown 14.9
1916 Female, age 42, unknown 12.5
2409 Female, age 72, unknown 11.4
2699 Male, age 18, unknown 11.3
1851 Male, age 51, unknown 11.1
1941 Male, age 53, unknown 10.7
1889 Female, age 72, unknown 9.9
2583 Male, age 75, right hemisphere 9.2
2665 Male, age 74, both hemispheres 8.7
2590 Female, age 75, unknown 7.2
Superior colliculus
nTPM: 8.8
2668 Female, age 75, unknown 11.0
1796 Male, age 53, unknown 10.2
2087 Female, age 72, unknown 10.1
1895 Male, age 76, right hemisphere 10.0
2587 Male, age 74, left hemisphere 9.3
1839 Male, age 51, unknown 8.4
2664 Male, age 75, both hemispheres 7.9
1913 Female, age 42, unknown 7.4
2261 Male, age 18, unknown 7.4
1995 Male, age 72, unknown 6.6
Ventral tegmental area
nTPM: 9.8
2218 Male, age 76, both hemispheres 11.6
1942 Male, age 51, unknown 10.4
1915 Female, age 42, unknown 10.1
2410 Female, age 72, unknown 9.8
2021 Male, age 53, unknown 9.1
2223 Female, age 72, unknown 7.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 139

Max nTPM: 15.0
Min nTPM: 3.8
Std nTPM: 1.7
Median nTPM: 6.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 12.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 11.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 10.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 10.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 9.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 9.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 9.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 9.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 9.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.6
FF:10158-103A5 76 years, female 29.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 18.5
Min nTPM: 17.3
Sample A Female 18.5
Sample B Female 17.9
Sample C Male 18.1
Sample D Male 17.3
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.7
Sample A Female 19.3
Sample B Female 20.4
Sample C Male 19.0
Sample D Male 16.7
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 19.5
Min nTPM: 18.3
Sample B Female 19.5
Sample C Male 18.6
Sample D Male 18.3
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 18.7
Min nTPM: 16.3
Sample A Female 16.9
Sample B Female 16.7
Sample C Male 18.7
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.9
Samples: 4

Max nTPM: 47.6
Min nTPM: 37.6
Sample A Male 43.5
Sample B Male 37.6
Sample C Female 42.7
Sample D Female 47.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
70527963 Antisense, RP_050623_01_D09, Mouse strain C57BL/6J (56 days, male) 1.5

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