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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
182.3
nTPM
Monaco:
125.6
nTPM
Schmiedel:
127.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
182.3
HPA sample
nTPM
gdT-cell nTPM: 144.7
Samples: 6
Max nTPM: 173.0
Min nTPM: 114.0
P10809_1007
118.0
P10809_1022
173.0
P10809_1041
172.7
P10809_1060
114.0
P10809_1077
145.1
P10809_1098
145.4
MAIT T-cell nTPM: 147.0
Samples: 6
Max nTPM: 184.9
Min nTPM: 104.6
P10809_1006
104.6
P10809_1024
160.2
P10809_1043
172.2
P10809_1062
130.2
P10809_1083
129.9
P10809_1097
184.9
Memory CD4 T-cell nTPM: 151.5
Samples: 6
Max nTPM: 199.6
Min nTPM: 116.2
P10809_1014
116.2
P10809_1026
199.6
P10809_1045
171.6
P10809_1064
141.3
P10809_1086
140.0
P10809_1113
140.5
Memory CD8 T-cell nTPM: 148.4
Samples: 5
Max nTPM: 171.5
Min nTPM: 116.9
P10809_1012
116.9
P10809_1027
143.3
P10809_1046
171.5
P10809_1065
157.0
P10809_1111
153.5
Naive CD4 T-cell nTPM: 112.4
Samples: 6
Max nTPM: 136.4
Min nTPM: 76.7
P10809_1015
76.7
P10809_1030
124.2
P10809_1049
136.4
P10809_1068
105.6
P10809_1085
117.3
P10809_1112
114.0
Naive CD8 T-cell nTPM: 122.6
Samples: 6
Max nTPM: 143.2
Min nTPM: 94.7
P10809_1016
94.7
P10809_1031
111.0
P10809_1050
136.9
P10809_1069
143.2
P10809_1087
129.9
P10809_1110
119.6
T-reg nTPM: 182.3
Samples: 6
Max nTPM: 216.4
Min nTPM: 151.5
P10809_1018
151.5
P10809_1037
194.5
P10809_1056
216.4
P10809_1075
169.9
P10809_1094
201.4
P10809_1106
160.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 93.3
Samples: 4
Max nTPM: 167.1
Min nTPM: 51.4
RHH5202_R3573
93.5
RHH5230_R3602
61.2
RHH5259_R3631
51.4
RHH5288_R3660
167.1
Effector memory CD8 T-cell nTPM: 84.7
Samples: 4
Max nTPM: 127.4
Min nTPM: 47.6
RHH5203_R3574
127.4
RHH5231_R3603
105.4
RHH5260_R3632
58.5
RHH5289_R3661
47.6
MAIT T-cell nTPM: 109.4
Samples: 4
Max nTPM: 178.1
Min nTPM: 56.9
RHH5233_R3605
113.6
RHH5205_R3576
56.9
RHH5262_R3634
89.0
RHH5297_R3663
178.1
Memory CD4 T-cell TFH nTPM: 125.6
Samples: 4
Max nTPM: 191.4
Min nTPM: 83.1
RHH5300_R3666
127.2
RHH5236_R3608
191.4
RHH5265_R3637
100.8
RHH5208_R3579
83.1
Memory CD4 T-cell Th1 nTPM: 109.7
Samples: 4
Max nTPM: 176.2
Min nTPM: 69.9
RHH5210_R3581
109.5
RHH5302_R3668
176.2
RHH5238_R3610
83.0
RHH5267_R3639
69.9
Memory CD4 T-cell Th1/Th17 nTPM: 101.7
Samples: 4
Max nTPM: 144.4
Min nTPM: 47.4
RHH5303_R3669
143.1
RHH5211_R3582
144.4
RHH5239_R3611
47.4
RHH5268_R3640
71.8
Memory CD4 T-cell Th17 nTPM: 75.4
Samples: 4
Max nTPM: 132.0
Min nTPM: 37.1
RHH5304_R3670
65.1
RHH5212_R3583
132.0
RHH5240_R3612
37.1
RHH5269_R3641
67.5
Memory CD4 T-cell Th2 nTPM: 101.7
Samples: 4
Max nTPM: 111.4
Min nTPM: 85.0
RHH5305_R3671
111.4
RHH5213_R3584
99.1
RHH5241_R3613
111.1
RHH5270_R3642
85.0
Naive CD4 T-cell nTPM: 78.1
Samples: 4
Max nTPM: 129.8
Min nTPM: 49.1
RHH5306_R3672
70.2
RHH5214_R3585
129.8
RHH5242_R3614
63.4
RHH5271_R3643
49.1
Naive CD8 T-cell nTPM: 57.8
Samples: 4
Max nTPM: 104.9
Min nTPM: 36.0
RHH5201_R3572
39.7
RHH5229_R3601
36.0
RHH5258_R3630
104.9
RHH5287_R3659
50.5
Non-Vd2 gdTCR nTPM: 114.5
Samples: 4
Max nTPM: 199.2
Min nTPM: 50.5
RHH5235_R3607
50.5
RHH5264_R3636
130.1
RHH5207_R3578
78.3
RHH5299_R3665
199.2
T-reg nTPM: 106.7
Samples: 4
Max nTPM: 158.7
Min nTPM: 53.3
RHH5301_R3667
158.7
RHH5237_R3609
138.1
RHH5266_R3638
53.3
RHH5209_R3580
76.8
Terminal effector memory CD4 T-cell nTPM: 93.6
Samples: 2
Max nTPM: 131.1
Min nTPM: 56.1
RHH5243_R3615
56.1
RHH5272_R3644
131.1
Terminal effector memory CD8 T-cell nTPM: 118.0
Samples: 4
Max nTPM: 198.8
Min nTPM: 53.4
RHH5232_R3604
79.1
RHH5204_R3575
198.8
RHH5261_R3633
53.4
RHH5296_R3662
140.7
Vd2 gdTCR nTPM: 123.6
Samples: 4
Max nTPM: 174.1
Min nTPM: 69.4
RHH5234_R3606
91.2
RHH5206_R3577
159.7
RHH5263_R3635
69.4
RHH5298_R3664
174.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
